ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2003
Efficient multipoint mapping: making use of dominant repulsion-phase markers.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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Who cites it
31 citing papers in PubMed.
- Identification and Validation of Stable Loci Underlying Productivity-Related Traits in Common Wheat.International journal of molecular sciences · 2026Article
- Genetic mapping of the powdery mildew resistance gene Pm7 on oat chromosome 5D.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Mapping of prehaustorial resistance against wheat leaf rust in einkorn (Frontiers in plant science · 2023Article
- Phenotypic characterisation and linkage mapping of domestication syndrome traits in yellow lupin (Lupinus luteus L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- The first genetic map for yellow lupin enables genetic dissection of adaptation traits in an orphan grain legume crop.BMC genetics · 2019Article
- Features of the organization of bread wheat chromosome 5BS based on physical mapping.BMC genomics · 2018Article
- New statistical methods for estimation of recombination fractions in FBMC bioinformatics · 2017Article
- QTL mapping and comparative genome analysis of agronomic traits including grain yield in winter rye.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Genetic evidence for differential selection of grain and embryo weight during wheat evolution under domestication.Journal of experimental botany · 2015Article
- Construction of a microsatellites-based linkage map for the white grouper (Epinephelus aeneus).G3 (Bethesda, Md.) · 2014Article
- New evidence of ancestral polyploidy in the Genistoid legume Lupinus angustifolius L. (narrow-leafed lupin).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
- Fine-scale mapping of the Nasonia genome to chromosomes using a high-density genotyping microarray.G3 (Bethesda, Md.) · 2013Article
- SNP discovery and chromosome anchoring provide the first physically-anchored hexaploid oat map and reveal synteny with model species.PloS one · 2013Article
- Two-phase analysis in consensus genetic mapping.G3 (Bethesda, Md.) · 2012Article
- Identification and characterization of a novel powdery mildew resistance gene PmG3M derived from wild emmer wheat, Triticum dicoccoides.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Genetic analysis of wheat domestication and evolution under domestication.Journal of experimental botany · 2011Article
- Comparisons of four approximation algorithms for large-scale linkage map construction.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011Article
- Stochastic deletion-insertion algorithm to construct dense linkage maps.Statistics and its interface · 2011Article
- High-throughput identification of genetic markers using representational oligonucleotide microarray analysis.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- Recombination and its impact on the genome of the haplodiploid parasitoid wasp Nasonia.PloS one · 2010Article
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The paper is devoted to the problem of multipoint gene ordering with a particular focus on "dominance" complication that acts differently in conditions of coupling-phase and repulsion-phase markers. To solve the problem we split the dataset into two complementary subsets each containing shared codominant markers and dominant markers in the coupling-phase only. Multilocus ordering in the proposed algorithm is based on pairwise recombination frequencies and using the well-known travelling salesman problem (TSP) formalization. To obtain accurate results, we developed a multiphase algorithm that includes synchronized-marker ordering of two subsets assisted by re-sampling-based map verification, combining the resulting maps into an integrated map followed by verification of the integrated map. A new synchronized Evolution-Strategy discrete optimization algorithm was developed here for the proposed multilocus ordering approach in which common codominant markers facilitate stabilization of the marker order of the two complementary maps. High performance of the employed algorithm allows systematic treatment for the problem of verification of the obtained multilocus orders, based on computing-intensive bootstrap and jackknife technologies for detection and removing unreliable marker scores. The efficiency of the proposed algorithm was demonstrated on simulated and real data.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.