Evidence map›Paper›PMID 12925886›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2003

A new framework marker-based linkage map and SDPs for the rat HXB/BXH strain set.

Martin Jirout, Drahomíra Krenová, Vladimír Kren, Laura Breen, Michal Pravenec, Nicholas J Schork, Morton P Printz

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Genetic structure of the LXS panel of recombinant inbred mouse strains: a powerful resource for complex trait analysis.Mammalian genome : official journal of the International Mammalian Genome Society · 2004
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Martin JiroutDepartment of Pharmacology 0636, University of California San Diego, La Jolla, California 92093-0636, USA. mjirout@ucsd.edu
Drahomíra Krenová
Vladimír Kren
Laura Breen
Michal Pravenec
Nicholas J Schork
Morton P Printz
University of California, San Diego · USCharles University · CZ

Funding

UNIQUE CARDIOVASCULAR RESPONSE TO STRESSORS AND LINKAGE WITH HYPERTENSIONP01HL035018 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PRINTZ, MORTON P · 1986 to 2007
$14.7M
Phenotyping--vasoactive post synaptic agonist pharmacogU01HL069758 · NHLBI · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI O'CONNOR, DANIEL T · 2001 to 2004
$12.1M
FAMILY BLOOD PRESSURE PROGRAMU01HL064777 · NHLBI · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI SCHORK, NICHOLAS JOSEPH · 2000 to 2004
$1.1M
NHLBI NIH HHS P01 HL-35018NHLBI NIH HHS U01 HL64777-04NHLBI NIH HHS U01 HL69758-02
6 · The paper itself

Abstract

A new contiguous genetic linkage map of the HXB/BXH set of rat recombinant inbred (RI) strains was constructed to enhance QTL mapping power and precision, and thereby make the RI strain set a better genomics resource. The HXB/BXH rat RI strains were developed from a cross between the hypertensive SHR/OlaIpcv and normotensive BN- Lx/Cub rat strains and have been shown useful for identifying quantitative trait loci (QTL) for a variety of cardiovascular, metabolic, and behavioral phenotypes. In the current analysis, the DNAs from 31 existing strains, 1 substrain, and 4 extinct strains were genotyped for a selection of polymorphic microsatellite marker loci, predominantly polymorphic framework markers from high-density integrated rat genome maps. The resulting linkage map consists of 245 microsatellite markers spanning a total length of 1789 cM with an average inter-marker distance of ~8.0 cM. This map covers the rat genome contiguously and completely with the exception of two locations on Chromosomes (Chrs) 11 and 16. The new genotypic information obtained also permitted further genetic characterization of the RI strain set including strain independence, genetic similarity among the individual strains, and non-syntenic associations between loci.

Indexed as

AllelesChromosome MappingAnimalsCluster AnalysisCrosses, GeneticElectrophoresis, Polyacrylamide GelMicrosatellite RepeatsQuantitative Trait LociRatsRats, Inbred Strains

Identifiers

PMID12925886
OpenAlexW1987954800

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.