Evidence map›Paper›PMID 12923078›Full record

ArticleJournal of bacteriology2003

Composition, acquisition, and distribution of the Vi exopolysaccharide-encoding Salmonella enterica pathogenicity island SPI-7.

Derek Pickard, John Wain, Stephen Baker, Alexandra Line, Sonia Chohan, Maria Fookes, Andrew Barron, Peadar O Gaora, José A Chabalgoity, Niren Thanky and 5 more

Abstract read
In one paragraph

Article in Journal of bacteriology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed.

  1. Article
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  8. Infection biology ofEcoSal Plus · 2024
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  11. Tropical medicine and infectious disease · 2023
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  12. TheMicrobiology (Reading, England) · 2023
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  13. FromACS omega · 2023
    Review
  14. Review
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  17. Review
  18. Article
  19. Review
  20. Article

26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Derek PickardCentre for Molecular Microbiology and Infection, Department of Biological Sciences, Imperial College of Science, Technology and Medicine, Armstrong Road, London SW7 2AZ, UK. d.pickard@imperial.ac.uk
John Wain
Stephen Baker
Alexandra Line
Sonia Chohan
Maria Fookes
Andrew Barron
Peadar O Gaora
José A Chabalgoity
Niren Thanky
Christoph Scholes
Nicholas Thomson
Michael Quail
Julian Parkhill
Gordon Dougan

Funding

Wellcome Trust
6 · The paper itself

Abstract

Vi capsular polysaccharide production is encoded by the viaB locus, which has a limited distribution in Salmonella enterica serovars. In S. enterica serovar Typhi, viaB is encoded on a 134-kb pathogenicity island known as SPI-7 that is located between partially duplicated tRNA(pheU) sites. Functional and bioinformatic analysis suggests that SPI-7 has a mosaic structure and may have evolved as a consequence of several independent insertion events. Analysis of viaB-associated DNA in Vi-positive S. enterica serovar Paratyphi C and S. enterica serovar Dublin isolates revealed the presence of similar SPI-7 islands. In S. enterica serovars Paratyphi C and Dublin, the SopE bacteriophage and a 15-kb fragment adjacent to the intact tRNA(pheU) site were absent. In S. enterica serovar Paratyphi C only, a region encoding a type IV pilus involved in the adherence of S. enterica serovar Typhi to host cells was missing. The remainder of the SPI-7 islands investigated exhibited over 99% DNA sequence identity in the three serovars. Of 30 other Salmonella serovars examined, 24 contained no insertions at the equivalent tRNA(pheU) site, 2 had a 3.7-kb insertion, and 4 showed sequence variation at the tRNA(pheU)-phoN junction, which was not analyzed further. Sequence analysis of the SPI-7 region from S. enterica serovar Typhi strain CT18 revealed significant synteny with clusters of genes from a variety of saprophytic bacteria and phytobacteria, including Pseudomonas aeruginosa and Xanthomonas axonopodis pv. citri. This analysis suggested that SPI-7 may be a mobile element, such as a conjugative transposon or an integrated plasmid remnant.

Indexed as

Genes, BacterialBacterial ProteinsCitrobacter freundiiComputational BiologyConjugation, GeneticDNA Transposable ElementsMolecular Sequence DataMultigene FamilyPlantsPolysaccharides, BacterialRNA, Transfer, Amino AcylSalmonella entericaSequence Analysis, DNASoil MicrobiologyVirulenceBacterial Proteinscapsular polysaccharide, SalmonellaDNA Transposable ElementsPolysaccharides, BacterialRNA, Transfer, Amino Acyl

Identifiers

PMID12923078
PMCPMC180996

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.