Evidence map›Paper›PMID 12921534›Full record

ArticleThe Biochemical journal2003

Characterization of the anti-apoptotic mechanism of Bcl-B.

Dayong Zhai, Ning Ke, Haichao Zhang, Uri Ladror, Mary Joseph, Andreas Eichinger, Adam Godzik, Shi-Chung Ng, John C Reed

Open access · bronzeAbstract read
In one paragraph

Article in The Biochemical journal, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Review
  3. Functional Analysis of the Promoter Regions of Two Apoptosis-Related Genes (International journal of molecular sciences · 2021
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  15. Vaccinia virus protein F1L is a caspase-9 inhibitor.The Journal of biological chemistry · 2010
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Dayong ZhaiThe Burnham Institute, La Jolla, CA 92037, USA.
Ning Ke
Haichao Zhang
Uri Ladror
Mary Joseph
Andreas Eichinger
Adam Godzik
Shi-Chung Ng
John C Reed
Sanford Burnham Prebys Medical Discovery Institute · USAbbott (United Kingdom) · GB

Funding

PEPTIDE COMBINATORIAL LIBRARY--IDENTIFY TUMOR ANTIGEN &CREATE THERAPY VACCINESP01CA078040 · NCI · TORREY PINES INST FOR MOLECULAR STUDIES · PI OSTRESH, JOHN M · 1998 to 2002
$4.7M
Mitochondria and Apoptosis (revised GM60554)R01GM060554 · NIGMS · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI REED, JOHN C · 2000 to 2009
$3.5M
NCI NIH HHS CA78040NIGMS NIH HHS GM60554
6 · The paper itself

Abstract

Bcl-B protein is an anti-apoptotic member of the Bcl-2 family protein that contains all the four BH (Bcl-2 homology) domains (BH1, BH2, BH3 and BH4) and a predicted C-terminal transmembrane domain. Our previous results showed that Bcl-B binds Bax and suppresses apoptosis induced by over-expression of Bax; however, Bcl-B does not bind or suppress Bak. To explore the molecular basis for the differential binding and suppression of Bax and Bak, we studied the BH3 dimerization domains of Bax and Bak. Chimeric mutants of Bax and Bak were generated that swapped the BH3 domains of these pro-apoptotic proteins. Bcl-B associated with and blocked apoptosis induced by mutant Bak containing the BH3 domain of Bax, but not mutant Bax containing the BH3 domain of Bak. In contrast, Bcl-X(L) protein bound and suppressed apoptosis induction by Bax, Bak and both BH3-domain chimeras. A strong correlation between binding and apoptosis suppression was also obtained using a series of alanine substitutions spanning the length of the Bax BH3 domain to identify critical residues for Bcl-B binding. Conversely, using structure-based modelling to design mutations in the BH3-binding pocket of Bcl-B, we produced two Bcl-B mutants (Leu86-->Ala and Arg96-->Gln) that failed to bind Bax and that also were unable to suppress apoptosis induced by Bax over-expression. In contrast, other Bcl-B mutants that still bound Bax retained protective activity against Bax-induced cell death, thus serving as a control. We conclude that, in contrast with some other anti-apoptotic Bcl-2-family proteins, a strong correlation exists for Bcl-B between binding to pro-apoptotic multidomain Bcl-2 family proteins and functional apoptosis suppression.

Indexed as

ApoptosisAmino Acid SequenceAnimalsbcl-2-Associated X Proteinbcl-2 Homologous Antagonist-Killer ProteinBinding SitesCell LineCOS CellsCytoprotectionHumansMembrane ProteinsMolecular Sequence DataMutationProtein Structure, TertiaryProto-Oncogene ProteinsProto-Oncogene Proteins c-bcl-2BAK1 protein, humanBAX protein, humanbcl-2-Associated X Proteinbcl-2 Homologous Antagonist-Killer ProteinBCL2-like 10 proteinMembrane ProteinsProto-Oncogene ProteinsProto-Oncogene Proteins c-bcl-2

Identifiers

PMID12921534
PMCPMC1223753
OpenAlexW2072757401

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.