Evidence map›Paper›PMID 12917486›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome.

Alexis Dufresne, Marcel Salanoubat, Frédéric Partensky, François Artiguenave, Ilka M Axmann, Valérie Barbe, Simone Duprat, Michael Y Galperin, Eugene V Koonin, Florence Le Gall and 11 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 185 papers.

0numbers the graph read from it
0cells of the map it votes in
185citing papers in PubMed
38.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

185 citing papers in PubMed, 468 citations in OpenAlex.

  1. Article
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  4. Review
  5. Adaptive Evolution Signatures inMicroorganisms · 2024
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  8. Review
  9. Viruses · 2023
    Article
  10. Prophage-Derived Regions inInternational journal of molecular sciences · 2023
    Article
  11. Introduction to Cyanobacteria.Advances in biochemical engineering/biotechnology · 2023
    Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Review

125 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 1 institution in 1 country.

Alexis DufresneStation Biologique, Unité Mixte de Recherche 7127, Centre National de la Recherche Scientifique et Université Paris 6, BP74, 29682 Roscoff Cedex, France.
Marcel Salanoubat
Frédéric Partensky
François Artiguenave
Ilka M Axmann
Valérie Barbe
Simone Duprat
Michael Y Galperin
Eugene V Koonin
Florence Le Gall
Kira S Makarova
Martin Ostrowski
Sophie Oztas
Catherine Robert
Igor B Rogozin
David J Scanlan
Nicole Tandeau de Marsac
Jean Weissenbach
Patrick Wincker
Yuri I Wolf
Wolfgang R Hess
Sorbonne Université · FR

Funding

Intramural NIH HHS Z99 LM999999
6 · The paper itself

Abstract

Prochlorococcus marinus, the dominant photosynthetic organism in the ocean, is found in two main ecological forms: high-light-adapted genotypes in the upper part of the water column and low-light-adapted genotypes at the bottom of the illuminated layer. P. marinus SS120, the complete genome sequence reported here, is an extremely low-light-adapted form. The genome of P. marinus SS120 is composed of a single circular chromosome of 1,751,080 bp with an average G+C content of 36.4%. It contains 1,884 predicted protein-coding genes with an average size of 825 bp, a single rRNA operon, and 40 tRNA genes. Together with the 1.66-Mbp genome of P. marinus MED4, the genome of P. marinus SS120 is one of the two smallest genomes of a photosynthetic organism known to date. It lacks many genes that are involved in photosynthesis, DNA repair, solute uptake, intermediary metabolism, motility, phototaxis, and other functions that are conserved among other cyanobacteria. Systems of signal transduction and environmental stress response show a particularly drastic reduction in the number of components, even taking into account the small size of the SS120 genome. In contrast, housekeeping genes, which encode enzymes of amino acid, nucleotide, cofactor, and cell wall biosynthesis, are all present. Because of its remarkable compactness, the genome of P. marinus SS120 might approximate the minimal gene complement of a photosynthetic organism.

Indexed as

Genome, BacterialAdaptation, PhysiologicalBase CompositionCell WallChlorophyllCitric Acid CycleCyanobacteriaDNA, BacterialDNA RepairGene RearrangementMarine BiologyMolecular Sequence DataNucleotidesOceans and SeasOpen Reading FramesPhotosynthesisChlorophyllDNA, BacterialNucleotides

Identifiers

PMID12917486
PMCPMC187748
OpenAlexW2044151730

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.