Evidence map›Paper›PMID 12917321›Full record

ArticleMolecular and cellular biology2003

U1 snRNP-dependent function of TIAR in the regulation of alternative RNA processing of the human calcitonin/CGRP pre-mRNA.

Hui Zhu, Robert A Hasman, Katherine M Young, Nancy L Kedersha, Hua Lou

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
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  11. T-cell intracellular antigens in health and disease.Cell cycle (Georgetown, Tex.) · 2015
    Review
  12. Article
  13. Far upstream element-binding protein 1 and RNA secondary structure both mediate second-step splicing repression.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Hui ZhuDepartment of Genetics, School of Medicine, Case Western Reserve University, Ireland Cancer Center, University Hospitals of Cleveland, Cleveland, Ohio 44106, USA.
Robert A Hasman
Katherine M Young
Nancy L Kedersha
Hua Lou
University Hospitals of Cleveland · USBrigham and Women's Hospital · USCase Western Reserve University · US

Funding

CYTOLYTIC EFFECTOR MECHANISMS OF NUCLEOLYSIN TIA-1R01AI033600 · NIAID · DANA-FARBER CANCER INSTITUTE · PI ANDERSON, PAUL J. · 1993 to 2010
$3.4M
Post-transcriptional regulation of TNF-alpha productionR01AI050167 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI ANDERSON, PAUL J. · 2001 to 2005
$1.7M
REGULATION OF ALTERNATIVE PROCESSING OF CALCITONIN/CGRPR01GM058019 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI BERGET, SUSAN M · 1999 to 2002
$857k
Characterization of mammalian stress granulesR56AI033600 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI ANDERSON, PAUL J. · 2005 to 2005
$437k
NIAID NIH HHS AI33600NIAID NIH HHS AI50167NIAID NIH HHS R01 AI033600NIAID NIH HHS R01 AI050167NIAID NIH HHS R56 AI033600NIGMS NIH HHS GM58019NIGMS NIH HHS R01 GM058019
6 · The paper itself

Abstract

Alternative RNA processing of human calcitonin/CGRP pre-mRNA is regulated by an intronic enhancer element. Previous studies have demonstrated that multiple sequence motifs within the enhancer and a number of trans-acting factors play critical roles in the regulation. Here, we report the identification of TIAR as a novel player in the regulation of human calcitonin/CGRP alternative RNA processing. TIAR binds to the U tract sequence motif downstream of a pseudo 5' splice site within the previously characterized intron enhancer element. Binding of TIAR promotes inclusion of the alternative 3'-terminal exon located more than 200 nucleotides upstream from the U tract. In cells that preferentially include this exon, overexpression of a mutant TIAR that lacks the RNA binding domains suppressed inclusion of this exon. In this report, we also demonstrate an unusual novel interaction between U6 snRNA and the pseudo 5' splice site, which was shown previously to bind U1 snRNA. Interestingly, TIAR binding to the U tract sequence depends on the interaction of not only U1 but also U6 snRNA with the pseudo 5' splice site. Conversely, TIAR binding promotes U6 snRNA binding to its target. The synergistic relationship between TIAR and U6 snRNA strongly suggests a novel role of U6 snRNP in regulated alternative RNA processing.

Indexed as

ProteinsAlternative SplicingBinding SitesCalcitoninCalcitonin Gene-Related PeptideEnhancer Elements, GeneticExonsHeLa CellsHumansIntronsMembrane ProteinsMutationPoly(A)-Binding ProteinsPoly URibonucleoprotein, U1 Small NuclearRibonucleoprotein, U4-U6 Small NuclearCalcitoninCalcitonin Gene-Related PeptideMembrane ProteinsPoly(A)-Binding ProteinsPoly UProteinsRibonucleoprotein, U1 Small NuclearRibonucleoprotein, U4-U6 Small NuclearRNA-Binding ProteinsRNA, MessengerRNA PrecursorsT-Cell Intracellular Antigen-1TIA1 protein, humanTIAL1 protein, human

Identifiers

PMID12917321
PMCPMC180986
OpenAlexW2115122534

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.