Evidence map›Paper›PMID 12915735›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

Mpi recombinase globally modulates the surface architecture of a human commensal bacterium.

Michael J Coyne, Katja G Weinacht, Corinna M Krinos, Laurie E Comstock

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 136 citations in OpenAlex.

  1. Article
  2. Gene regulation inMicrobiology and molecular biology reviews : MMBR · 2025
    Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Lessons from the model gut BacteroidalesJournal of bacteriology · 2025
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Surface Properties ofMicroorganisms · 2021
    Article
  20. Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Michael J CoyneChanning Laboratory, Brigham and Women's Hospital, Harvard Medical School, 181 Longwood Avenue, Boston, MA 02115, USA.
Katja G Weinacht
Corinna M Krinos
Laurie E Comstock
Harvard University · USWashington University in St. Louis · US

Funding

Regulation of the multiple polysaccharides of Bacteroides fragilisR01AI044193 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI COMSTOCK, LAURIE E · 1999 to 2010
$2.7M
Regulation of the multiple polysaccharides of Bacteroides fragilisR56AI044193 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI COMSTOCK, LAURIE E · 2008 to 2008
$344k
NIAID NIH HHS R01 AI044193NIAID NIH HHS R56 AI044193
6 · The paper itself

Abstract

The mammalian gut represents a complex and diverse ecosystem, consisting of unique interactions between the host and microbial residents. Bacterial surfaces serve as an interface that promotes and responds to this dynamic exchange, a process essential to the biology of both symbionts. The human intestinal microorganism, Bacteroides fragilis, is able to extensively modulate its surface. Analysis of the B. fragilis genomic sequence, together with genetic conservation analyses, cross-species cloning experiments, and mutational studies, revealed that this organism utilizes an endogenous DNA inversion factor to globally modulate the expression of its surface structures. This DNA invertase is necessary for the inversion of at least 13 regions located throughout the genome, including the promoter regions for seven of the capsular polysaccharide biosynthesis loci, an accessory polysaccharide biosynthesis locus, and five other regions containing consensus promoter sequences. Bacterial DNA invertases of the serine site-specific recombinase family are typically encoded by imported elements such as phage and plasmids, and act locally on a single region of the imported element. In contrast, the conservation and unique global regulatory nature of the process in B. fragilis suggest an evolutionarily ancient mechanism for surface adaptation to the changing intestinal milieu during commensalism.

Indexed as

Chromosome InversionPromoter Regions, GeneticSymbiosisBacterial CapsulesBacterial ProteinsBacteroides fragilisBase SequenceChromosome MappingDNA NucleotidyltransferasesHumansMolecular Sequence DataPhenotypeRecombinasesBacterial ProteinsDNA NucleotidyltransferasesRecombinases

Identifiers

PMID12915735
PMCPMC193581
OpenAlexW2002625811

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.