Evidence map›Paper›PMID 12913156›Full record

ArticlePlant physiology2003

Expression profiling of cytokinin action in Arabidopsis.

Aaron M Rashotte, Susan D B Carson, Jennifer P C To, Joseph J Kieber

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 131 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
131citing papers in PubMed, 1 pooled it
25.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

131 citing papers in PubMed, 1 synthesis or guideline pooled it, 311 citations in OpenAlex.

  1. Pooled it
  2. Different Dynamics:Biology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. The structure of B-ARR reveals the molecular basis of transcriptional activation by cytokinin.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Genome-wide analysis of radishFrontiers in plant science · 2024
    Article
  14. Cloning and Functional Analysis of thePlants (Basel, Switzerland) · 2023
    Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. ABCG11 modulates cytokinin responses inFrontiers in plant science · 2022
    Article
  20. Article

71 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Aaron M RashotteUniversity of North Carolina, Biology Department, CB Number 3280, Chapel Hill, North Carolina 27599-3280, USA.
Susan D B Carson
Jennifer P C To
Joseph J Kieber
University of North Carolina at Chapel Hill · US

Funding

Analysis of Cytokinin Signaling in ArabidopsisR01GM064425 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI KIEBER, JOSEPH J · 2002 to 2005
$1.1M
NIGMS NIH HHS GM4421-01NIGMS NIH HHS R01 GM064425
6 · The paper itself

Abstract

The phytohormone cytokinin is an important regulator of plant growth and development; however, relatively few genes that mediate cytokinin responses have been identified. Genome-wide analyses of Arabidopsis seedlings using the approximately 8,300-element Affymetrix Arabidopsis GeneChips (Affymetrix, Santa Clara, CA) to examine cytokinin-responsive genes were conducted, revealing at least 30 genes whose steady-state level of mRNA was elevated and at least 40 that were down-regulated at multiple time points after application of cytokinin. The cytokinin up-regulated genes include the type-A Arabidopsis response regulators (ARRs), which had been shown previously to be cytokinin primary response genes, cytokinin oxidase, which encodes an enzyme that degrades cytokinins, and several transcription factors. Cytokinin down-regulated genes include several peroxidases and kinases and an E3 ubiquitin ligase. We identified a common sequence motif enriched in the upstream regions of the most consistently cytokinin up-regulated genes. This motif is highly similar to the optimal DNA-binding sites for ARR1/ARR2, type-B ARRs that have been implicated in the transcriptional elevation of the type-A ARRs. Additionally, genome-wide analyses of cytokinin receptor mutants (wol/cre1) revealed large-scale changes in gene expression, including down-regulation of the type-A ARRs and several meristem and cell cycle genes, such as CycD3. Mutations in CRE1 reduced but did not eliminate the effect of cytokinin on gene expression for a subset of cytokinin-responsive genes and had little or no effect on others, suggesting functional redundancy among the cytokinin receptors.

Indexed as

Gene Expression ProfilingArabidopsisArabidopsis ProteinsCytokininsGene Expression Regulation, PlantGenes, PlantMutationProtein KinasesReceptors, Cell SurfaceArabidopsis ProteinsCytokininsProtein KinasesReceptors, Cell SurfaceWOL protein, ArabidopsisNon-programmatic

Identifiers

PMID12913156
PMCPMC181285
OpenAlexW1978962014

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.