ArticlePlant physiology2003
RNA expression profiles and data mining of sugarcane response to low temperature.
Article in Plant physiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.
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Who cites it
41 citing papers in PubMed, 187 citations in OpenAlex.
- Effects of Abscisic Acid on the Physiological and Biochemical Responses ofInternational journal of molecular sciences · 2024Article
- Transcriptomic and Proteomic Landscape of Sugarcane Response to Biotic and Abiotic Stressors.International journal of molecular sciences · 2023Review
- Review
- Synthesis of Abscisic Acid inFrontiers in microbiology · 2021Article
- Current breeding and genomic approaches to enhance the cane and sugar productivity under abiotic stress conditions.3 Biotech · 2020Review
- Comparative analysis of drought-responsive transcriptomes of sugarcane genotypes with differential tolerance to drought.3 Biotech · 2020Article
- Integration of Transcriptional and Post-transcriptional Analysis Revealed the Early Response Mechanism of Sugarcane to Cold Stress.Frontiers in genetics · 2020Article
- Comparative Analysis of two Sugarcane AncestorsInternational journal of molecular sciences · 2019Article
- Review
- Comparison of the response of alternative oxidase and uncoupling proteins to bacterial elicitor induced oxidative burst.PloS one · 2019Article
- Article
- Salt stress induces changes in the proteomic profile of micropropagated sugarcane shoots.PloS one · 2017Article
- Sugarcane Water Stress Tolerance Mechanisms and Its Implications on Developing Biotechnology Solutions.Frontiers in plant science · 2017Review
- CAMUR: Knowledge extraction from RNA-seq cancer data through equivalent classification rules.Bioinformatics (Oxford, England) · 2016Article
- The Roles of Aquaporins in Plant Stress Responses.Journal of developmental biology · 2016Review
- AcPIP2, a plasma membrane intrinsic protein from halophyte Atriplex canescens, enhances plant growth rate and abiotic stress tolerance when overexpressed in Arabidopsis thaliana.Plant cell reports · 2015Article
- Low-Temperature-Induced Expression of Rice Ureidoglycolate Amidohydrolase is Mediated by a C-Repeat/Dehydration-Responsive Element that Specifically Interacts with Rice C-Repeat-Binding Factor 3.Frontiers in plant science · 2015Article
- Subtractive hybridization-mediated analysis of genes and in silico prediction of associated microRNAs under waterlogged conditions in sugarcane (Saccharum spp.).FEBS open bio · 2014Article
- Full-length enriched cDNA libraries and ORFeome analysis of sugarcane hybrid and ancestor genotypes.PloS one · 2014Article
- Biofuel and energy crops: high-yield Saccharinae take center stage in the post-genomics era.Genome biology · 2013Review
Corrections and comments
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Tropical and subtropical plants are generally sensitive to cold and can show appreciable variation in their response to cold stress when exposed to low positive temperatures. Using nylon filter arrays, we analyzed the expression profile of 1,536 expressed sequence tags (ESTs) of sugarcane (Saccharum sp. cv SP80-3280) exposed to cold for 3 to 48 h. Thirty-four cold-inducible ESTs were identified, of which 20 were novel cold-responsive genes that had not previously been reported as being cold inducible, including cellulose synthase, ABI3-interacting protein 2, a negative transcription regulator, phosphate transporter, and others, as well as several unknown genes. In addition, 25 ESTs were identified as being down-regulated during cold exposure. Using a database of cold-regulated proteins reported for other plants, we searched for homologs in the sugarcane EST project database (SUCEST), which contains 263,000 ESTs. Thirty-three homologous putative cold-regulated proteins were identified in the SUCEST database. On the basis of the expression profiles of the cold-inducible genes and the data-mining results, we propose a molecular model for the sugarcane response to low temperature.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.