Evidence map›Paper›PMID 12908106›Full record

ArticleMolecular genetics and genomics : MGG2003

High-resolution genetic and physical mapping of the cauliflower high-beta-carotene gene Or ( Orange).

L Li, S Lu, D M O'Halloran, D F Garvin, J Vrebalov

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Article in Molecular genetics and genomics : MGG, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Genetic mapping of green curd gene Gr in cauliflower.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Article
  5. Article
  6. Construction and characterization of a peanut HindIII BAC library.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2005
    Article
  7. Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

5 authors.

L LiUSDA-ARS, Plant, Soil and Nutrition Laboratory, Cornell University, Ithaca, NY 14853, USA. ll37@cornell.edu
S Lu
D M O'Halloran
D F Garvin
J Vrebalov

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mutation in the cauliflower gene Or causes high levels of beta-carotene to accumulate in various tissues of the plant that are normally devoid of carotenoids. To decipher the molecular basis by which Or regulates carotenoid accumulation, we have undertaken the isolation of Or by a map-based cloning strategy. Two previously isolated, locus-specific, sequence-characterized amplified region (SCAR) markers that flank Or were employed for the analysis of a large segregating population consisting of 1632 F(2) individuals, and a high-resolution genetic linkage map of the Or locus region was developed. To facilitate positional cloning, we constructed a cauliflower genomic library in a bacterial artificial chromosome (BAC) vector, using high molecular weight DNA from Or homozygotes. The BAC library comprises 60,288 clones with an average insert size of 110 kb, and represents an estimated 10-fold coverage of the genome. A BAC contig encompassing the Or locus was established by screening the library with a marker that is closely linked to Or and by identifying overlapping BAC clones by chromosome walking. Physical mapping delimited the Or locus to a 50-kb DNA fragment within a single BAC clone, which corresponds to a genetic interval of 0.3 cM.

Indexed as

Genes, Plantbeta CaroteneBrassicaChromosome MappingChromosomes, Artificial, BacterialDNA, PlantGenomic LibraryMutationPhysical Chromosome Mappingbeta CaroteneDNA, Plant

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.