Evidence map›Paper›PMID 12907736›Full record

ArticleNucleic acids research2003

An important role for RUNX3 in human L1 transcription and retrotransposition.

Nuo Yang, Lin Zhang, Yue Zhang, Haig H Kazazian

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed
11.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed, 168 citations in OpenAlex.

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  16. OsTBP2.1, a TATA-Binding Protein, Alters the Ratio ofInternational journal of molecular sciences · 2022
    Article
  17. NOS2 andProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  18. Review
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38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Nuo YangDepartment of Genetics, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA.
Lin Zhang
Yue Zhang
Haig H Kazazian
University of Pennsylvania · US

Funding

HUMAN TRANSPOSABLE ELEMENTR01GM045398 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI KAZAZIAN, HAIG H. · 1991 to 2010
$4.7M
NIGMS NIH HHS GM 045398NIGMS NIH HHS R01 GM045398
6 · The paper itself

Abstract

LINE-1s (long interspersed nuclear elements-1) are abundant non-LTR retrotransposons that comprise 17% of the human genome. The 5' untranslated region (5'UTR) of human L1 (L1Hs) houses a poorly understood internal promoter. Here we report that mutations at a putative runt-domain transcription factor (RUNX) site (+83 to +101) in the 5'UTR decreased L1Hs transcription and retrotransposition in cell culture-based assays. Exogenous expression of RUNX3, but not the other two RUNX family members, RUNX1 and RUNX2, increased L1Hs transcription and retrotransposition, which were otherwise decreased by siRNAs targeting RUNX3 and a dominant negative RUNX. Further more, the specific interaction between RUNX3 and its binding site was demonstrated by an electrophoretic mobility shift assay (EMSA) using an anti-RUNX3 antibody. Interestingly, RUNX3 may also regulate the antisense promoter activity of L1Hs 5'UTR via another putative RUNX site (+526 to +508), as revealed by site-directed mutations and exogenous expression of RUNX factors. Our results indicate an important role for RUNX3 in L1Hs retrotransposition as well as transcription from its 5'UTR in both sense and antisense directions, and they should contribute to our understanding of the mechanism underlying L1Hs retrotransposition and its impact on the expression of adjacent cellular genes.

Indexed as

Mutagenesis, InsertionalTranscription, Genetic5' Flanking RegionBase SequenceBinding SitesCell Line, TumorCore Binding Factor Alpha 3 SubunitDNA-Binding ProteinsElectrophoretic Mobility Shift AssayGene ExpressionHeLa CellsHumansLong Interspersed Nucleotide ElementsOligonucleotidesPoint MutationPromoter Regions, GeneticCore Binding Factor Alpha 3 SubunitDNA-Binding ProteinsOligonucleotidesRNA, MessengerRunx3 protein, humanTranscription Factors

Identifiers

PMID12907736
PMCPMC169909
OpenAlexW2137007379

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.