Evidence map›Paper›PMID 12907733›Full record

ArticleNucleic acids research2003

Sequence-structure-function relationships of Tgs1, the yeast snRNA/snoRNA cap hypermethylase.

John Mouaikel, Janusz M Bujnicki, Jamal Tazi, Rémy Bordonné

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
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  4. PIMT Controls Insulin Synthesis and Secretion through PDX1.International journal of molecular sciences · 2023
    Article
  5. A Trimethylguanosine Synthase1-like (TGS1) homologue is implicated in vernalisation and flowering time control.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

John MouaikelInstitut de Génétique Moléculaire, IFR122 CNRS-UMR5535, 1919 route de Mende, 34000 Montpellier, France.
Janusz M Bujnicki
Jamal Tazi
Rémy Bordonné
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Saccharomyces cerevisiae Tgs1 methyltransferase (MTase) is responsible for conversion of the m(7)G caps of snRNAs and snoRNAs to a 2,2,7- trimethylguanosine structure. To learn more about the evolutionary origin of Tgs1 and to identify structural features required for its activity, we performed a structure-function study. By using sequence comparison and phylogenetic analysis, we found that Tgs1 shows strongest similarity to Mj0882, a protein related to a family comprised of bacterial rRNA:m(2)G MTases RsmC and RsmD. The structural information of Mj0882 was used to build a homology model of Tgs1p which allowed us to predict the range of the minimal globular MTase domain and the localization of other residues that may be important for enzyme function. To further characterize functional domains of Tgs1, mutants were constructed and tested for their effects on cell viability, subcellular localization and binding to the small nuclear ribonucleoproteins (snRNPs) and small nucleolar RNPs (snoRNPs). We found that the N-terminal domain of the hypermethylase is dispensable for binding to the common snRNPs and snoRNPs proteins but essential for correct nucleolar localization. Site- directed mutagenesis of Tgs1 allowed also the identification of the residues likely to be involved in the formation of the m7G-binding site and the catalytic center.

Indexed as

Amino Acid SequenceBinding SitesCatalytic DomainCell DivisionCell NucleolusGreen Fluorescent ProteinsLuminescent ProteinsMethyltransferasesMicroscopy, FluorescenceMolecular Sequence DataMutationPhylogenyProtein Structure, TertiaryRecombinant Fusion ProteinsRNA CapsRNA, Small NuclearGreen Fluorescent ProteinsLuminescent ProteinsMethyltransferasesRecombinant Fusion ProteinsRNA CapsRNA, Small NuclearRNA, Small Nucleolartrimethylguanosine synthase

Identifiers

PMID12907733
PMCPMC169889
OpenAlexW2092515393

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.