Evidence map›Paper›PMID 12907718›Full record

ArticleNucleic acids research2003

Efficient incorporation of positively charged 2', 3'-dideoxynucleoside-5'-triphosphates by DNA polymerases and their application in 'direct-load' DNA sequencing.

Patrick J Finn, Matthew G Bull, Haiguang Xiao, Paula D Phillips, John R Nelson, Greg Grossmann, Satyam Nampalli, Bernard F McArdle, J Anthony Mamone, Parke K Flick and 2 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Patrick J FinnAmersham Biosciences, 800 Centennial Avenue, Piscataway, NJ 08855-1327, USA.
Matthew G Bull
Haiguang Xiao
Paula D Phillips
John R Nelson
Greg Grossmann
Satyam Nampalli
Bernard F McArdle
J Anthony Mamone
Parke K Flick
Carl W Fuller
Shiv Kumar

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A series of charge-modified, dye-labeled 2', 3'-dideoxynucleoside-5'-triphosphates have been synthesized and evaluated as reagents for dye-terminator DNA sequencing. Unlike the commonly used dye-labeled terminators, these terminators possess a net positive charge and migrate in the opposite direction to dye-labeled Sanger fragments during electrophoresis. Post-sequencing reaction purification is not required to remove unreacted nucleotide or associated breakdown products prior to electrophoresis. Thus, DNA sequencing reaction mixtures can be loaded directly onto a separating medium such as a sequencing gel. The charge-modified nucleotides have also been shown to be more efficiently incorporated by a number of DNA polymerases than regular dye-labeled dideoxynucleotide terminators or indeed normal dideoxynucleoside-5'-triphosphates.

Indexed as

Base SequenceChromatography, High Pressure LiquidColoring AgentsDideoxynucleosidesDNADNA-Directed DNA PolymeraseLysineMolecular Sequence DataMolecular StructureNucleotidesReproducibility of ResultsSensitivity and SpecificitySequence Analysis, DNAColoring AgentsDideoxynucleosidesDNADNA-Directed DNA PolymeraseLysineNucleotidestrimethyllysine

Identifiers

PMID12907718
PMCPMC169923

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.