Evidence map›Paper›PMID 12904386›Full record

ArticleJournal of clinical microbiology2003

Geographic diversity among genotypes of Entamoeba histolytica field isolates.

Ali Haghighi, Seiki Kobayashi, Tsutomu Takeuchi, Nitaya Thammapalerd, Tomoyoshi Nozaki

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  8. Article
  9. TheCurrent tropical medicine reports · 2016
    Article
  10. Article
  11. Burden of Liver Abscess and Survival Risk Score in Thailand: A Population-Based Study.The American journal of tropical medicine and hygiene · 2016
    Observational
  12. Review
  13. Evolutionary genomics and population structure of Entamoeba histolytica.Computational and structural biotechnology journal · 2014
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Evidence for a link between locus R-R sequence type and outcome of infection with Entamoeba histolytica.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2012
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ali HaghighiDepartment of Parasitology, National Institute of Infectious Diseases, Keio University School of Medicine, Shinjuku-ku, Japan.
Seiki Kobayashi
Tsutomu Takeuchi
Nitaya Thammapalerd
Tomoyoshi Nozaki

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It has been known that only 5 to 10% of those infected with Entamoeba histolytica develop symptomatic disease. However, the parasite and the host factors that determine the onset of disease remain undetermined. Molecular typing by using polymorphic genetic loci has been proven to aid in the close examination of the population structure of E. histolytica field isolates in nature. In the present study, we analyzed the genetic polymorphisms of two noncoding loci (locus 1-2 and locus 5-6) and two protein-coding loci (chitinase and serine-rich E. histolytica protein [SREHP]) among 79 isolates obtained from different geographic regions, mainly Japan, Thailand, and Bangladesh. When the genotypes of the four loci were combined for all isolates that we have analyzed so far (overlapping isolates from mass infection events were excluded), a total of 53 different genotypes were observed among 63 isolates. The most remarkable and extensive variations among the four loci was found in the SREHP locus; i.e., 34 different genotypes were observed among 52 isolates. These results demonstrate that E. histolytica has an extremely complex genetic structure independent of geographic location. Our results also show that, despite the proposed transmission of other sexually transmitted diseases, including human immunodeficiency virus infection, from Thailand to Japan, the spectra of the genotypes of the E. histolytica isolates from these two countries are distinct, suggesting that the major E. histolytica strains prevalent in Japan at present were likely introduced from countries other than Thailand. Although the genetic polymorphism of the SREHP locus was previously suggested to be closely associated with the clinical presentation, e.g., colitis or dysentery and liver abscess, no association between the clinical presentation and the SREHP genotype at either the nucleotide or the predicted amino acid level was demonstrated.

Indexed as

Entamoeba histolyticaAmino Acid SequenceAnimalsBangladeshBase SequenceCambodiaChitinasesGenetic VariationGeographyGhanaHeterozygoteHumansIndonesiaJapanMembrane ProteinsPolymorphism, GeneticChitinasesMembrane ProteinsProtozoan Proteinsserine-rich protein, Entamoeba histolytica

Identifiers

PMID12904386
PMCPMC179867

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.