Evidence map›Paper›PMID 12904356›Full record

ArticleJournal of clinical microbiology2003

Evidence for genetic linkage between the gene segments encoding NSP4 and VP6 proteins in common and reassortant human rotavirus strains.

Miren Iturriza-Gòmara, Emma Anderton, Gagandeep Kang, Chris Gallimore, Wendy Phillips, Ulrich Desselberger, Jim Gray

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
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  4. Distinguishing the genotype 1 genes and proteins of human Wa-like rotaviruses vs. porcine rotaviruses.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2016
    Article
  5. Article
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  7. Putative canine origin of rotavirus strain detected in a child with diarrhea, Taiwan.Vector borne and zoonotic diseases (Larchmont, N.Y.) · 2012
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Miren Iturriza-GòmaraEnteric Virus Unit, Enteric, Respiratory and Neurological Virus Laboratory, Health Protection Agency, London, United Kingdom. MIturriza@phls.org.uk
Emma Anderton
Gagandeep Kang
Chris Gallimore
Wendy Phillips
Ulrich Desselberger
Jim Gray

Funding

Wellcome Trust 063144
6 · The paper itself

Abstract

NSP4-encoding genes of 78 human rotavirus strains of common or reassortant genotypes were characterized by reverse transcription-PCR followed by sequencing and phylogenetic analysis. It was found that all the human strains characterized clustered into only two of the five known NSP4 genotypes. Linkage between NSP4 genotypes and VP6 subgroups was 100%, NSP4 genotype A being linked to VP6 of subgroup I (SGI) and NSP4 of genotype B being linked to VP6 of SGII. The diversity among the NSP4- and VP6-encoding genes was significantly less than that among the VP7 and VP4 genes in cocirculating human rotavirus strains. Whereas G and P types appear to be shared among different animal species and humans, the NSP4- and VP6-encoding genes appear to segregate according to their host of origin, suggesting that these two proteins may be host restriction determinants. The NSP4-VP6 association may be structurally determined during rotavirus replication (morphogenesis).

Indexed as

Antigens, ViralAnimalsCapsid ProteinsDNA, ViralGenetic LinkageGenotypeGlycoproteinsHumansPhylogenyRotavirusRotavirus InfectionsToxins, BiologicalViral Nonstructural ProteinsAntigens, ViralCapsid ProteinsDNA, ViralGlycoproteinsNS28 protein, rotavirusToxins, BiologicalViral Nonstructural ProteinsVP6 protein, Rotavirus

Identifiers

PMID12904356
PMCPMC179808

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.