Evidence map›Paper›PMID 12902281›Full record

ArticleApplied and environmental microbiology2003

Directed evolution of Thermus maltogenic amylase toward enhanced thermal resistance.

Young-Wan Kim, Ji-Hye Choi, Jung-Wan Kim, Cheonseok Park, Jung-Woo Kim, Hyunju Cha, Soo-Bok Lee, Byoung-Ha Oh, Tae-Wha Moon, Kwan-Hwa Park

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.4field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 100 citations in OpenAlex.

  1. Trial
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  11. Structure of Bacillus amyloliquefaciens alpha-amylase at high resolution: implications for thermal stability.Acta crystallographica. Section F, Structural biology and crystallization communications · 2010
    Article
  12. Article
  13. Article
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  15. Article
  16. Laboratory-directed protein evolution.Microbiology and molecular biology reviews : MMBR · 2005
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Young-Wan KimNational Laboratory for Functional Food Carbohydrates, Center for Agricultural Biomaterials, and Department of Food Science and Technology, Seoul National University, Suwon 441-744, Korea.
Ji-Hye Choi
Jung-Wan Kim
Cheonseok Park
Jung-Woo Kim
Hyunju Cha
Soo-Bok Lee
Byoung-Ha Oh
Tae-Wha Moon
Kwan-Hwa Park
Seoul National University · KRIncheon National University · KRKyung Hee University · KRPohang University of Science and Technology · KRYonsei University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The thermostability of maltogenic amylase from Thermus sp. strain IM6501 (ThMA) was improved greatly by random mutagenesis using DNA shuffling. Four rounds of DNA shuffling and subsequent recombination of the mutations produced the highly thermostable mutant enzyme ThMA-DM, which had a total of seven individual mutations. The seven amino acid substitutions in ThMA-DM were identified as R26Q, S169N, I333V, M375T, A398V, Q411L, and P453L. The optimal reaction temperature of the recombinant enzyme was 75 degrees C, which was 15 degrees C higher than that of wild-type ThMA, and the melting temperature, as determined by differential scanning calorimetry, was increased by 10.9 degrees C. The half-life of ThMA-DM was 172 min at 80 degrees C, a temperature at which wild-type ThMA was completely inactivated in less than 1 min. Six mutations that were generated during the evolutionary process did not significantly affect the specific activity of the enzyme, while the M375T mutation decreased activity to 23% of the wild-type level. The molecular interactions of the seven mutant residues that contributed to the increased thermostability of the mutant enzyme with other adjacent residues were examined by comparing the modeled tertiary structure of ThMA-DM with those of wild-type ThMA and related enzymes. The A398V and Q411L substitutions appeared to stabilize the enzyme by enhancing the interdomain hydrophobic interactions. The R26Q and P453L substitutions led potentially to the formation of genuine hydrogen bonds. M375T, which was located near the active site of ThMA, probably caused a conformational or dynamic change that enhanced thermostability but reduced the specific activity of the enzyme.

Indexed as

Bacterial ProteinsBiological EvolutionCatalysisEnzyme StabilityGlycoside HydrolasesHot TemperatureHydrogen BondingHydrophobic and Hydrophilic InteractionsMutationProtein ConformationThermusBacterial Proteinsglucan 1,4-alpha-maltohydrolaseGlycoside Hydrolases

Identifiers

PMID12902281
PMCPMC169122
OpenAlexW2075682904

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.