Evidence map›Paper›PMID 12900506›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

The VirD2 pilot protein of Agrobacterium-transferred DNA interacts with the TATA box-binding protein and a nuclear protein kinase in plants.

László Bakó, Masaaki Umeda, Antonio F Tiburcio, Jeff Schell, Csaba Koncz

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Genomic consequences associated with Agrobacterium-mediated transformation of plants.The Plant journal : for cell and molecular biology · 2024
    Review
  2. Review
  3. Review
  4. Frontiers in plant science · 2021
    Article
  5. Review
  6. Article
  7. Article
  8. The Agrobacterium Ti Plasmids.Microbiology spectrum · 2014
    Review
  9. Applying horizontal gene transfer phenomena to enhance non-viral gene therapy.Journal of controlled release : official journal of the Controlled Release Society · 2013
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Agrobacterium in the genomics age.Plant physiology · 2009
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

László BakóMax Planck Institute for Plant Breeding Research, Carl-von-Linne-Weg 10, D-50829 Cologne (Köln), Germany.
Masaaki Umeda
Antonio F Tiburcio
Jeff Schell
Csaba Koncz

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The bacterial virulence protein VirD2 plays an important role in nuclear import and chromosomal integration of Agrobacterium-transferred DNA in fungal, plant, animal, and human cells. Here we show that in nuclei of alfalfa cells, VirD2 interacts with and is phosphorylated by CAK2Ms, a conserved plant ortholog of cyclin-dependent kinase-activating kinases. CAK2Ms binds to and phosphorylates the C-terminal regulatory domain of RNA polymerase II largest subunit, which can recruit the TATA box-binding protein. VirD2 is found in tight association with the TATA box-binding protein in vivo. These results indicate that recognition of VirD2 is mediated by widely conserved nuclear factors in eukaryotes.

Indexed as

Virulence FactorsAmino Acid SequenceArabidopsisArabidopsis ProteinsBacterial ProteinsCell NucleusDNA, BacterialMedicago sativaMolecular Sequence DataPlant DiseasesPlant ProteinsPlantsProtein KinasesRecombinant ProteinsRhizobiumSequence Homology, Amino AcidArabidopsis ProteinsBacterial ProteinsCAK2 protein, ArabidopsisDNA, BacterialPlant ProteinsProtein KinasesRecombinant ProteinsTATA-Box Binding ProteinT-DNAVirulence Factors

Identifiers

PMID12900506
PMCPMC187781

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.