ArticleThe Plant cell2003
Two-step regulation and continuous retrotransposition of the rice LINE-type retrotransposon Karma.
Article in The Plant cell, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
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Who cites it
34 citing papers in PubMed, 96 citations in OpenAlex.
- A comprehensive analysis of two Chinese cucumber genomes and a mutant population as resources for precision breeding.Horticulture research · 2026Article
- Molecular and biochemical characterization of rice developed through conventional integration of nDart1-0 transposon gene.Scientific reports · 2023Article
- Small RNAs and Karma methylation in Elaeis guineensis mother palms are linked to high clonal mantling.Plant molecular biology · 2023Article
- Extensively Current Activity of Transposable Elements in Natural Rice Accessions Revealed by Singleton Insertions.Frontiers in plant science · 2021Article
- DNA methylation changes in clonally propagated oil palm.Plant cell reports · 2020Article
- Construction and characterization of a knock-down RNA interference line ofPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020Article
- Retrotranspositional landscape of Asian rice revealed by 3000 genomes.Nature communications · 2019Article
- Horizontal Transfer of Non-LTR Retrotransposons from Arthropods to Flowering Plants.Molecular biology and evolution · 2018Article
- The gymnastics of epigenomics in rice.Plant cell reports · 2018Review
- Identification of Polymorphisms Associated with Drought Adaptation QTL in Brassica napus by Resequencing.G3 (Bethesda, Md.) · 2016Article
- Loss of Karma transposon methylation underlies the mantled somaclonal variant of oil palm.Nature · 2015Article
- Salt Tolerant and Sensitive Rice Varieties Display Differential Methylome Flexibility under Salt Stress.PloS one · 2015Article
- Control of transposable elements in Arabidopsis thaliana.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2014Review
- Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice.Proceedings of the National Academy of Sciences of the United States of America · 2014Article
- Tissue culture-induced heritable genomic variation in rice, and their phenotypic implications.PloS one · 2014Article
- Characterization of OsMIK in a rice mutant with reduced phytate content reveals an insertion of a rearranged retrotransposon.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Control of transposon activity by a histone H3K4 demethylase in rice.Proceedings of the National Academy of Sciences of the United States of America · 2013Article
- RNA-Mediated Gene Duplication and Retroposons: Retrogenes, LINEs, SINEs, and Sequence Specificity.International journal of evolutionary biology · 2013Article
- Recent progress in the understanding of tissue culture-induced genome level changes in plants and potential applications.Plant cell reports · 2012Review
- TCUP: A Novel hAT Transposon Active in Maize Tissue Culture.Frontiers in plant science · 2012Article
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Authors and funding
3 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Here, we report the identification of Karma, a LINE-type retrotransposon of plants for which continuous retrotransposition was observed in consecutive generations. The transcription of Karma is activated in cultured cells of rice upon DNA hypomethylation. However, transcription is insufficient for retrotransposition, because no increase in the copy number was observed in cultured cells or in the first generation of plants regenerated from them. Despite that finding, copy number increase was detected in the next generation of regenerated plants as well as in later generations, suggesting that the post-transcriptional regulation of Karma retrotransposition is development dependent. Our results indicate that two different mechanisms, one transcriptional and the other developmental, control the mobilization of KARMA: In addition, unlike other known active plant retrotransposons, Karma is not subject to de novo methylation, and retrotransposition persists through several generations.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.