Evidence map›Paper›PMID 12897153›Full record

ArticleMolecular and cellular biology2003

Autophosphorylation of the catalytic subunit of the DNA-dependent protein kinase is required for efficient end processing during DNA double-strand break repair.

Qi Ding, Yeturu V R Reddy, Wei Wang, Timothy Woods, Pauline Douglas, Dale A Ramsden, Susan P Lees-Miller, Katheryn Meek

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 177 papers.

0numbers the graph read from it
0cells of the map it votes in
177citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

177 citing papers in PubMed, 321 citations in OpenAlex.

  1. Article
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  4. Review
  5. Review
  6. Secrets of DNA-PKcs beyond DNA repair.NPJ precision oncology · 2024
    Review
  7. Review
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  14. Review
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117 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Qi DingCollege of Veterinary Medicine and Department of Pathobiology and Diagnostic Investigation, Michigan State University, East Lansing, Michigan 48824, USA.
Yeturu V R Reddy
Wei Wang
Timothy Woods
Pauline Douglas
Dale A Ramsden
Susan P Lees-Miller
Katheryn Meek
Michigan State University · USUniversity of Calgary · CASegeberger Kliniken · DEUNC Lineberger Comprehensive Cancer Center

Funding

Relevant Targets of the DNA Dependent Protein KinaseR01AI048758 · NIAID · MICHIGAN STATE UNIVERSITY · PI MEEK, KATHERYN D · 2000 to 2016
$5.2M
Resolution of Complex Breaks by Nonhomologous End JoiningR01CA084442 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RAMSDEN, DALE A · 2000 to 2019
$4.8M
BIASED RECOMBINATION AT THE MURINE IG DH-JH LOCUSR01AI032600 · NIAID · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI MEEK, KATHERYN D. · 1992 to 1994
–
NCI NIH HHS CA 84442-01NCI NIH HHS R01 CA084442NIAID NIH HHS AI32600NIAID NIH HHS AI42938NIAID NIH HHS R01 AI048758
6 · The paper itself

Abstract

The DNA-dependent protein kinase (DNA-PK) plays an essential role in nonhomologous DNA end joining (NHEJ) by initially recognizing and binding to DNA breaks. We have shown that in vitro, purified DNA-PK undergoes autophosphorylation, resulting in loss of activity and disassembly of the kinase complex. Thus, we have suggested that autophosphorylation of the DNA-PK catalytic subunit (DNA-PKcs) may be critical for subsequent steps in DNA repair. Recently, we defined seven autophosphorylation sites within DNA-PKcs. Six of these are tightly clustered within 38 residues of the 4,127-residue protein. Here, we show that while phosphorylation at any single site within the major cluster is not critical for DNA-PK's function in vivo, mutation of several sites abolishes the ability of DNA-PK to function in NHEJ. This is not due to general defects in DNA-PK activity, as studies of the mutant protein indicate that its kinase activity and ability to form a complex with DNA-bound Ku remain largely unchanged. However, analysis of rare coding joints and ends demonstrates that nucleolytic end processing is dramatically reduced in joints mediated by the mutant DNA-PKcs. We therefore suggest that autophosphorylation within the major cluster mediates a conformational change in the DNA-PK complex that is critical for DNA end processing. However, autophosphorylation at these sites may not be sufficient for kinase disassembly.

Indexed as

DNA DamageDNA HelicasesDNA RepairAnimalsAntigens, NuclearAspartic AcidBase SequenceBinding SitesBlotting, WesternCatalytic DomainCHO CellsCricetinaeDNA-Activated Protein KinaseDNA-Binding ProteinsDNA, ComplementaryDNA NucleotidyltransferasesAntigens, NuclearAspartic AcidDNA-Activated Protein KinaseDNA-Binding ProteinsDNA, ComplementaryDNA HelicasesDNA NucleotidyltransferasesKu AutoantigenNuclear ProteinsOligonucleotidesPRKDC protein, humanProtein Serine-Threonine KinasesRecombinant ProteinsVDJ RecombinasesXRCC5 protein, humanXrcc6 protein, human

Identifiers

PMID12897153
PMCPMC166339
OpenAlexW2096782300

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.