Evidence map›Paper›PMID 12896996›Full record

ArticleJournal of bacteriology2003

Expression of the Pseudomonas putida OCT plasmid alkane degradation pathway is modulated by two different global control signals: evidence from continuous cultures.

M Alejandro Dinamarca, Isabel Aranda-Olmedo, Antonio Puyet, Fernando Rojo

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
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  5. Synthetic Biology Approaches to Hydrocarbon Biosensors: A Review.Frontiers in bioengineering and biotechnology · 2021
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  6. Transcriptome Changes inInternational journal of molecular sciences · 2020
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  9. Genome Sequencing Reveals the Potential ofFrontiers in microbiology · 2017
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  15. Article
  16. Mineralization of metanilic acid by Pseudomonas aeruginosa CLRI BL22.World journal of microbiology & biotechnology · 2007
    Article
  17. Article
  18. Biodegradation of 8-anilino-1-naphthalenesulfonic acid by Pseudomonas aeruginosa.Journal of industrial microbiology & biotechnology · 2006
    Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

M Alejandro DinamarcaDepartamento de Biotecnología Microbiana, Centro Nacional de Biotecnología, CSIC, Campus de la Universidad Autónoma de Madrid, Cantoblanco, 28049 Madrid, Spain.
Isabel Aranda-Olmedo
Antonio Puyet
Fernando Rojo
Universidad Autónoma de Madrid · ESEstación Experimental del Zaidín · ESUniversidad Complutense de Madrid · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Expression of the genes of the alkane degradation pathway encoded in the Pseudomonas putida OCT plasmid are subject to negative and dominant global control depending on the carbon source used and on the physiological status of the cell. We investigated the signals responsible for this control in chemostat cultures under conditions of nutrient or oxygen limitation. Our results show that this global control is not related to the growth rate and responds to two different signals. One signal is the concentration of the carbon source that generates the repressing effect (true catabolite repression control). The second signal is influenced by the level of expression of the cytochome o ubiquinol oxidase, which in turn depends on factors such as oxygen availability or the carbon source used. Since under carbon limitation conditions the first signal is relieved but the second signal is not, we propose that modulation mediated by the cytochrome o ubiquinol oxidase is not classical catabolite repression control but rather a more general physiological control mechanism. The two signals have an additive, but independent, effect, inhibiting induction of the alkane degradation pathway.

Indexed as

Gene Expression Regulation, BacterialAlkanesBacterial ProteinsBiodegradation, EnvironmentalCarbonCulture MediaElectron Transport Complex IVOxygenPlasmidsPromoter Regions, GeneticPseudomonas putidaSignal TransductionSuccinic AcidAlkanesBacterial ProteinsCarbonCulture Mediacytochrome o oxidaseElectron Transport Complex IVOxygenSuccinic Acid

Identifiers

PMID12896996
PMCPMC166476
OpenAlexW2066461160

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.