Evidence map›Paper›PMID 12888512›Full record

ArticleNucleic acids research2003

Transcription increases multiple spontaneous point mutations in Salmonella enterica.

Richard Ellis Hudson, Ulfar Bergthorsson, Howard Ochman

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 44 citations in OpenAlex.

  1. Experimental evolution ofMicrobiology spectrum · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Transcription-associated mutagenesis.Annual review of genetics · 2014
    Review
  9. Article
  10. Article
  11. Article
  12. Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  13. Transcription as a source of genome instability.Nature reviews. Genetics · 2012
    Review
  14. Article
  15. Review
  16. Article
  17. Transcriptional de-repression and Mfd are mutagenic in stressed Bacillus subtilis cells.Journal of molecular microbiology and biotechnology · 2011
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Richard Ellis HudsonDepartment of Biochemistry and Molecular Biophysics, University of Arizona, Tucson, AZ 85721, USA.
Ulfar Bergthorsson
Howard Ochman
University of Arizona · US

Funding

GENETIC ANALYSIS OF BACTERIAL CHROMSOME STRUCTURER01GM027068 · NIGMS · UNIVERSITY OF UTAH · PI ROTH, JOHN R · 1985 to 2018
$8.9M
Genome Erosion in Infectious MicroorganismsR01GM056120 · NIGMS · UNIVERSITY OF ROCHESTER · PI OCHMAN, HOWARD · 1997 to 2007
$1.3M
BIASES IN THE RATES AND PATTERNS OF MOLECULAR EVOLUTIONR01GM055535 · NIGMS · UNIVERSITY OF ROCHESTER · PI OCHMAN, HOWARD · 1997 to 1999
–
NIGMS NIH HHS GM27068NIGMS NIH HHS GM55535NIGMS NIH HHS GM56120NIGMS NIH HHS R01 GM027068NIGMS NIH HHS R01 GM056120
6 · The paper itself

Abstract

The spontaneous rate of G.C-->A.T mutations and a hotspot T.A-->G.C transversion are known to increase with the frequency of transcription-increases that have been ascribed primarily to processes that affect only these specific mutations. To investigate how transcription induces other spontaneous point mutations, we tested for its effects in repair-proficient Salmonella enterica using reversion assays of chromosomally inserted alleles. Our results indicate that transcription increases rates of all tested point mutations in the induced gene: induction significantly increased the individual rates of an A.T-->T.A transversion, an A.T-->G.C transition and the pooled rates of the three other point mutations assayed. Although the S.enterica genome is thought to have a mutational bias towards G.C base pairs, transitions creating A.T pairs were approximately 10 times more frequent than the reverse mutation, resulting in an overall mutation pressure to lower G+C contents. Transitions occurred at roughly twice the rate of transversions, similar to results from sequence comparisons; however, several individual transversions are more frequent than the least common transition.

Indexed as

Point MutationTranscription, GeneticDrug Resistance, BacterialGenes, BacterialRifampinSalmonella entericaRifampin

Identifiers

PMID12888512
PMCPMC169952
OpenAlexW2151784676

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.