Evidence map›Paper›PMID 12885957›Full record

ArticleMolecular biology and evolution2003

Early vertebrate evolution of the TATA-binding protein, TBP.

Alla A Bondareva, Edward E Schmidt

Open access · greenAbstract read
In one paragraph

Article in Molecular biology and evolution, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Syngeneic immune-dependent abortions in mice suggest paternal alloantigen-independent mechanisms.American journal of reproductive immunology (New York, N.Y. : 1989) · 2008
    Article
  5. Article
  6. Article
  7. The origins of polypeptide domains.BioEssays : news and reviews in molecular, cellular and developmental biology · 2007
    Review
  8. Article
  9. Evolution of ABCA4 proteins in vertebrates.Journal of molecular evolution · 2005
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Alla A BondarevaVeterinary Molecular Biology, Marsh Labs, Montana State University, USA.
Edward E Schmidt
Montana State University · US

Funding

The Maternal/Fetal InteractionR01AI055739 · NIAID · MONTANA STATE UNIVERSITY - BOZEMAN · PI SCHMIDT, EDWARD E · 2005 to 2009
$1.7M
DISRUPTION OF SPERMATID-SPECIFIC TBP EXPRESSION IN MICER03HD035824 · NICHD · UNIVERSITY OF UTAH · PI SCHMIDT, EDWARD E · 1998 to 1999
–
NIAID NIH HHS R01 AI055739NICHD NIH HHS R03 HD035824
6 · The paper itself

Abstract

TBP functions in transcription initiation in all eukaryotes and in Archaebacteria. Although the 181-amino acid (aa) carboxyl (C-) terminal core of the protein is highly conserved, TBP proteins from different phyla exhibit diverse sequences in their amino (N-) terminal region. In mice, the TBP N-terminus plays a role in protecting the placenta from maternal rejection; however the presence of similar TBP N-termini in nontherian tetrapods suggests that this domain also has more primitive functions. To gain insights into the pretherian functions of the N-terminus, we investigated its phylogenetic distribution. TBP cDNAs were isolated from representative nontetrapod jawed vertebrates (zebrafish and shark), from more primitive jawless vertebrates (lamprey and hagfish), and from a prevertebrate cephalochordate (amphioxus). Results showed that the tetrapod N-terminus likely arose coincident with the earliest vertebrates. The primary structures of vertebrate N-termini indicates that, historically, this domain has undergone events involving intragenic duplication and modification of short oligopeptide-encoding DNA sequences, which might have provided a mechanism of de novo evolution of this polypeptide.

Indexed as

Amino Acid SequenceAnimalsBase SequenceDNA, ComplementaryEvolution, MolecularExonsFishesGene LibraryIntronsMiceModels, GeneticMolecular Sequence DataPeptidesPhylogenyProtein Structure, TertiarySpecies SpecificityDNA, ComplementaryPeptidesTATA-Box Binding Protein

Identifiers

PMID12885957
PMCPMC2577151
OpenAlexW2115931718

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.