Evidence map›Paper›PMID 12885876›Full record

ArticleThe Journal of general physiology2003

Probing the pore of ClC-0 by substituted cysteine accessibility method using methane thiosulfonate reagents.

Chia-Wei Lin, Tsung-Yu Chen

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The Journal of general physiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 62 citations in OpenAlex.

  1. Chloride ions in health and disease.Bioscience reports · 2024
    Review
  2. Biophysical and Pharmacological Insights to CLC Chloride Channels.Handbook of experimental pharmacology · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Chloride Ion Transport by theFrontiers in chemistry · 2018
    Article
  8. Article
  9. Helix O modulates voltage dependency of CLC-1.Pflugers Archiv : European journal of physiology · 2017
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review. Proton-coupled gating in chloride channels.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2009
    Review
  20. Blocking pore-open mutants of CLC-0 by amphiphilic blockers.The Journal of general physiology · 2009
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Chia-Wei LinCenter for Neuroscience, University of California-Davis, CA 95616, USA.
Tsung-Yu Chen
University of California, Davis · US

Funding

Molecular Physiology of CLC Chloride ChannelsR01GM065447 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI CHEN, TSUNG-YU · 2003 to 2018
$3.9M
Gating Mechanisms of CLC Chloride ChannelsR56GM065447 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CHEN, TSUNG-YU · 2008 to 2008
$375k
NIGMS NIH HHS GM-65447NIGMS NIH HHS R01 GM065447NIGMS NIH HHS R56 GM065447
6 · The paper itself

Abstract

ClC channels are a family of protein molecules containing two ion-permeation pores. Although these transmembrane proteins are important for a variety of physiological functions, their molecular operations are only superficially understood. High-resolution X-ray crystallography techniques have recently revealed the structures of two bacterial ClC channels, but whether vertebrate ClC channel pores are similar to those of bacterial homologues is not clear. To study the pore architecture of the Torpedo ClC-0 channel, we employed the substituted-cysteine-accessibility method (SCAM) and used charged methane thiosulfonate (MTS) compounds to modify the introduced cysteine. Several conclusions were derived from this approach. First, the MTS modification pattern from Y512C to E526C in ClC-0, which corresponds to residues forming helix R in bacterial ClC channels, is indeed consistent with the suggested helical structure. Second, the ClC-0 pore is more accessible to the negatively charged than to the positively charged MTS compound, a pore property that is regulated by the intrinsic electrostatic potential in the pore. Finally, attempts to modify the introduced cysteine at positions intracellular to the selectivity filter did not result in larger MTS modification rates for the open-state channel, suggesting that the fast gate of ClC-0 cannot be located at a position intracellular to the Cl- selectivity filter. Thus, the proposal that the glutamate side chain is the fast gate of the channel is applicable to ClC-0, revealing a structural and functional conservation of ClC channels between bacterial and vertebrate species.

Indexed as

Amino Acid SubstitutionAnimalsCell Membrane PermeabilityChloride ChannelsCysteineIndicators and ReagentsIon Channel GatingMesylatesPoint MutationProtein ConformationStructure-Activity RelationshipThiosulfonic AcidsTorpedoChloride ChannelsCLC-0 chloride channel protein, Torpedo californicaCysteineIndicators and ReagentsMesylatesmethanethiosulfonateThiosulfonic Acids

Identifiers

PMID12885876
PMCPMC2229544
OpenAlexW2019318072

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.