Evidence map›Paper›PMID 12885654›Full record

ArticleBiophysical journal2003

Comparison between the predictions of diffusion-reaction models and localized Ca2+ transients in amphibian skeletal muscle fibers.

David Novo, Marino DiFranco, Julio L Vergara

Open access · bronzeAbstract readComparative StudyEvaluation StudyValidation Study
In one paragraph

Article in Biophysical journal, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Quantitative optical nanophysiology of CaNature communications · 2018
    Article
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  6. Review
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  8. Article
  9. Dystrophic skeletal muscle fibers display alterations at the level of calcium microdomains.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  10. Article
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  12. Article
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  14. Article
  15. Patching the membranes up - new views on cellular healing.Journal of cellular and molecular medicine
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

David NovoDepartment of Physiology, UCLA School of Medicine, Los Angeles, California, USA.
Marino DiFranco
Julio L Vergara
University of California, Los Angeles · US

Funding

OPTICAL AND ELECTRICAL STUDIES IN SINGLE MUSCLE FIBERSR01AR025201 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI VERGARA, JULIO L. · 1986 to 2002
$719k
NIAMS NIH HHS AR25201
6 · The paper itself

Abstract

We developed a three-dimensional cylindrical diffusion-reaction model of a single amphibian myofibril in which Ca(2+) release occurred only at the Z-line. The model incorporated diffusion of Ca(2+), Mg(2+), and all relevant buffer species, as well as the kinetic binding reactions between the buffers and appropriate ions. Model data was blurred according to a Gaussian approximation of the point spread function of the microscope and directly compared with experimental data obtained using the confocal spot methodology. The flux parameters were adjusted until the simulated Z-line transient matched the experimental one. This model could not simultaneously predict key parameters of the experimental M- and Z-line transients, even when model parameters were adjusted to unreasonably extreme values. Even though the model was accurate in predicting the Z-line transient under conditions of high [EGTA], it predicted a significantly narrower Ca(2+) domain than observed experimentally. We modified the model to incorporate a broader band of release centered at the Z-line. This extended release model was superior both in simultaneously predicting critical features of the Z- and M-line transients as well as the domain profile under conditions of high [EGTA]. We conclude that a model of release occurring exclusively at the Z-line cannot explain our experimental data and suggest that Ca(2+) may be released from a broader region of the sarcoplasmic reticulum than just the T-tubule-sarcoplasmic reticulum junction.

Indexed as

Models, BiologicalAmphibiansAnimalsBiological TransportCalciumCalcium SignalingComputer SimulationDiffusionMagnesiumMuscle ContractionMuscle, SkeletalMyofibrilsRana catesbeianaSarcoplasmic ReticulumSensitivity and SpecificityTissue DistributionCalciumMagnesium

Identifiers

PMID12885654
PMCPMC1303228
OpenAlexW1985038169

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.