Evidence map›Paper›PMID 12879363›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2003

Comparative mapping in the pig: localization of 214 expressed sequence tags.

Susanna Cirera, Claus B Jørgensen, Milena Sawera, Terje Raudsepp, Bhanu P Chowdhary, Merete Fredholm

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 20 citations in OpenAlex.

  1. Arthrogryposis multiplex congenita (AMC), a hereditary disease in swine, maps to chromosome 5 by linkage analysis.Mammalian genome : official journal of the International Mammalian Genome Society · 2004
    Article
  2. Comparative map between the domestic pig and dog.Mammalian genome : official journal of the International Mammalian Genome Society · 2004
    Article
  3. Characterization of 298 ESTs from porcine back fat tissue and their assignment to the SSRH radiation hybrid map.Mammalian genome : official journal of the International Mammalian Genome Society · 2004
    Article
  4. Exceptional conservation of horse-human gene order on X chromosome revealed by high-resolution radiation hybrid mapping.Proceedings of the National Academy of Sciences of the United States of America · 2004
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Susanna CireraDepartment of Animal Science and Animal Health, Division of Genetics, The Royal Veterinary and Agricultural University, Groennegaardsvej 3, 1870 Frederiksberg C, Denmark.
Claus B Jørgensen
Milena Sawera
Terje Raudsepp
Bhanu P Chowdhary
Merete Fredholm
Texas A&M University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In total, 214 ESTs (Expressed Sequence Tags) were assigned to the porcine gene map by using somatic cell hybrid mapping, radiation hybrid mapping, and FISH. The ESTs were isolated from a porcine small intestine cDNA library on the basis of significant sequence identity with human annotated genes. In total, 390 primer pairs were designed primarily in the 3' UTR of the sequences. Overall, 58.6% of the ESTs were successfully mapped by this approach. In total, 191 of the localizations are in agreement with the human comparative map, strongly indicating that these represent true orthologous genes. The remaining 23 ESTs provide new comparative mapping data, which should be considered as preliminary until confirmed by other studies. Our mapping efforts provide a significant contribution to the porcine map as well as to the comparative map for human and pig.

Indexed as

Chromosome MappingExpressed Sequence TagsRadiation Hybrid MappingAnimalsDNA PrimersIn Situ Hybridization, FluorescenceSus scrofaDNA Primers

Identifiers

PMID12879363
OpenAlexW1967010685

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.