Evidence map›Paper›PMID 12871218›Full record

ArticleImmunology2003

Genomic structure around joining segments and constant regions of swine T-cell receptor alpha/delta (TRA/TRD) locus.

Hirohide Uenishi, Hideki Hiraiwa, Ryuji Yamamoto, Hiroshi Yasue, Yohtaroh Takagaki, Takashi Shiina, Eri Kikkawa, Hidetoshi Inoko, Takashi Awata

Open access · greenAbstract read
In one paragraph

Article in Immunology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. CD3εFrontiers in immunology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Hirohide UenishiGenome Research Department, National Institute of Agrobiological Sciences, Ibaraki, Japan. huenishi@affrc.go.jp
Hideki Hiraiwa
Ryuji Yamamoto
Hiroshi Yasue
Yohtaroh Takagaki
Takashi Shiina
Eri Kikkawa
Hidetoshi Inoko
Takashi Awata
Institute of Agrobiological Sciences · JPTokai University · JPKitasato University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A complete genomic region of 131.2 kb including the swine T-cell receptor alpha/delta constant region (TRAC/TRDC) and joining segments (TRAJ/TRDJ) was sequenced. The structure of this region was strikingly conserved in comparison to that of human or mouse. All of the 61 TRAJ segments detected in the human genomic sequence were detected in the swine sequence and the sequence of the protein binding site of T early alpha, the sequence of the alpha enhancer element and the conserved sequence block between TRAJ3 and TRAJ4 are highly conserved. Insertion of the repetitive sequences that interspersed after the differentiation of the species in mammals such as short interspersed nucleotide elements is markedly suppressed in comparison to other genomic regions, while the composition of the mammalian-wide interspersed sequences is relatively conserved in human and swine. This observation indicates the existence of a highly selective pressure to conserve this genomic region around TRAJ throughout the evolution of mammals.

Indexed as

AnimalsBase SequenceBiological EvolutionDNAEnhancer Elements, GeneticGene Rearrangement, T-LymphocyteGenes, RegulatorHumansImmunoglobulin Constant RegionsMiceMolecular Sequence DataReceptors, Antigen, T-CellRepetitive Sequences, Nucleic AcidSwineDNAImmunoglobulin Constant RegionsReceptors, Antigen, T-Cell

Identifiers

PMID12871218
PMCPMC1783003
OpenAlexW2072513228

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.