Evidence map›Paper›PMID 12869585›Full record

ArticleGenes & development2003

SKN-1 links C. elegans mesendodermal specification to a conserved oxidative stress response.

Jae Hyung An, T Keith Blackwell

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 408 papers.

0numbers the graph read from it
0cells of the map it votes in
408citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

408 citing papers in PubMed, 731 citations in OpenAlex.

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  7. [Bushen Yijing Formula attenuates amyloid β-protein deposi-tion and oxidative damage inZhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2026
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  15. Enhanced oxidative stress resilience inExperimental biology and medicine (Maywood, N.J.) · 2026
    Article
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348 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Jae Hyung AnCenter for Blood Research and Department of Pathology, Harvard Medical School, Boston, Massachusetts 02115, USA.
T Keith Blackwell
Dana-Farber/Boston Children's Cancer and Blood Disorders Center · USHarvard University · US

Funding

SKN-1 Regulation and Oxidative Stress Resistance in C. elegansR01GM062891 · NIGMS · JOSLIN DIABETES CENTER · PI BLACKWELL, T KEITH · 2001 to 2016
$5.6M
NIGMS NIH HHS GM62891NIGMS NIH HHS R01 GM062891
6 · The paper itself

Abstract

During the earliest stages of Caenorhabditis elegans embryogenesis, the transcription factor SKN-1 initiates development of the digestive system and other mesendodermal tissues. Postembryonic SKN-1 functions have not been elucidated. SKN-1 binds to DNA through a unique mechanism, but is distantly related to basic leucine-zipper proteins that orchestrate the major oxidative stress response in vertebrates and yeast. Here we show that despite its distinct mode of target gene recognition, SKN-1 functions similarly to resist oxidative stress in C. elegans. During postembryonic stages, SKN-1 regulates a key Phase II detoxification gene through constitutive and stress-inducible mechanisms in the ASI chemosensory neurons and intestine, respectively. SKN-1 is present in ASI nuclei under normal conditions, and accumulates in intestinal nuclei in response to oxidative stress. skn-1 mutants are sensitive to oxidative stress and have shortened lifespans. SKN-1 represents a connection between developmental specification of the digestive system and one of its most basic functions, resistance to oxidative and xenobiotic stress. This oxidative stress response thus appears to be both widely conserved and ancient, suggesting that the mesendodermal specification role of SKN-1 was predated by its function in these detoxification mechanisms.

Indexed as

Oxidative StressAmino Acid MotifsAnimalsBase SequenceBinding SitesCaenorhabditis elegansCaenorhabditis elegans ProteinsCell NucleusDNADNA-Binding ProteinsEndodermIntestinesMesodermMicroscopy, FluorescenceModels, BiologicalModels, GeneticCaenorhabditis elegans ProteinsDNADNA-Binding ProteinsParaquatskn-1 protein, C elegansTranscription Factors

Identifiers

PMID12869585
PMCPMC196237
OpenAlexW2098567793

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.