Evidence map›Paper›PMID 12869576›Full record

ArticleGenome research2003

The origin of human chromosome 1 and its homologs in placental mammals.

William J Murphy, Lutz Frönicke, Stephen J O'Brien, Roscoe Stanyon

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genome research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 80 citations in OpenAlex.

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  5. A rigorousFrontiers in molecular neuroscience · 2022
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  13. Refinement of macaque synteny arrangement with respect to the official rheMac2 macaque sequence assembly.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2008
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  19. Reconstruction of the ancestral ferungulate karyotype by electronic chromosome painting (E-painting).Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2006
    Article
  20. High-resolution comparative chromosome painting in the Arizona collared peccary (Pecari tajacu, Tayassuidae): a comparison with the karyotype of pig and sheep.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2006
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

William J MurphyLaboratory of Genomic Diversity, National Cancer Institute, Frederick, Maryland 21702, USA. murphywi@mail.ncifcrf.gov
Lutz Frönicke
Stephen J O'Brien
Roscoe Stanyon
National Cancer Institute · US

Funding

RADIATION HYBRID MAPPING OF CATS GENES ON THE HUMAN GENOMEZ01BC010265 · BC · BASIC SCIENCES · PI O'BRIEN, STEPHEN J · 1997 to 2006
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Mechanisms of Chromosome Rearrangements in the EvolutionZ01BC010436 · BC · BASIC SCIENCES · PI STANYON, ROSCOE · 2003 to 2004
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6 · The paper itself

Abstract

Developing ordered gene maps from multiple mammalian species coupled with chromosome-painting data provide a powerful resource for resolving the evolutionary history of chromosomes and whole genomes. In this work, we recapitulate the evolutionary history of human chromosome 1 and its homologs in placental mammals, putatively the largest physical unit in the ancestral placental genome. Precise definition of translocation exchange breakpoints in human, carnivore, cetartiodactyl, and rodent-ordered gene maps demonstrate that chromosome breakpoints, previously considered as equivalent, actually represent distinct chromosome positions and exchange events. Multidirectional chromosome painting, using probes from homologs to chromosome 1 in seven mammal species from six orders of placental mammals, confirm the gene-mapping results and indicate that the multiple human chromosome 1 homologs in these species are derived from independent fissions of a single ancestral chromosome. Chromosome painting using human chromosome 1 probes identifies a single human chromosome 1 homolog in phylogenetically distant taxa, the two-toed sloth, cetaceans, and higher primates. The diverse phylogenetic occurrence of a single Hsa1 synteny among the major clades of placental mammals suggests that human chromosome 1 represents an intact ancestral chromosome, which was variously fissioned in the majority of placental species. We find that the number of human chromosome 1 fissions in a specific lineage reflects its general rate of genomic evolution. Further, historic chromosome exchange appears to have been disproportionately clustered in two breakpoint hotspots on the long arm.

Indexed as

Evolution, MolecularPlacentaSequence Homology, Nucleic AcidAnimalsCatsCattleChromosome MappingChromosomes, Human, Pair 1DogsGenetic VariationHumansMammalsMiceMolecular Sequence DataRats

Identifiers

PMID12869576
PMCPMC403779
OpenAlexW1998846687

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.