Evidence map›Paper›PMID 12867459›Full record

ArticleJournal of bacteriology2003

IS981-mediated adaptive evolution recovers lactate production by ldhB transcription activation in a lactate dehydrogenase-deficient strain of Lactococcus lactis.

Roger S Bongers, Marcel H N Hoefnagel, Marjo J C Starrenburg, Marco A J Siemerink, John G A Arends, Jeroen Hugenholtz, Michiel Kleerebezem

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 78 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Genetics of Lactococci.Microbiology spectrum · 2019
    Review
  8. Article
  9. Article
  10. Further Elucidation of Galactose Utilization inFrontiers in microbiology · 2018
    Article
  11. Article
  12. Article
  13. Availability of public goods shapes the evolution of competing metabolic strategies.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  14. Article
  15. Promoter propagation in prokaryotes.Nucleic acids research · 2012
    Article
  16. Article
  17. Promoter reuse in prokaryotes.Mobile genetic elements · 2012
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Roger S BongersWageningen Centre for Food Sciences, NIZO Food Research, FNI Department, 6710 BA Ede, The Netherlands.
Marcel H N Hoefnagel
Marjo J C Starrenburg
Marco A J Siemerink
John G A Arends
Jeroen Hugenholtz
Michiel Kleerebezem
Nederlands Instituut Voor Zuivel Oonderzoek · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lactococcus lactis NZ9010 in which the las operon-encoded ldh gene was replaced with an erythromycin resistance gene cassette displayed a stable phenotype when grown under aerobic conditions, and its main end products of fermentation under these conditions were acetate and acetoin. However, under anaerobic conditions, the growth of these cells was strongly retarded while the main end products of fermentation were acetate and ethanol. Upon prolonged subculturing of this strain under anaerobic conditions, both the growth rate and the ability to produce lactate were recovered after a variable number of generations. This recovery was shown to be due to the transcriptional activation of a silent ldhB gene coding for an Ldh protein (LdhB) with kinetic parameters different from those of the native las operon-encoded Ldh protein. Nevertheless, cells producing LdhB produced mainly lactate as the end product of fermentation. The mechanism underlying the ldhB gene activation was primarily studied in a single-colony isolate of the recovered culture, designated L. lactis NZ9015. Integration of IS981 in the upstream region of ldhB was responsible for transcription activation of the ldhB gene by generating an IS981-derived -35 promoter region at the correct spacing with a natively present -10 region. Subsequently, analysis of 10 independently isolated lactate-producing derivatives of L. lactis NZ9010 confirmed that the ldhB gene is transcribed in all of them. Moreover, characterization of the upstream region of the ldhB gene in these derivatives indicated that site-specific and directional IS981 insertion represents the predominant mechanism of the observed recovery of the ability to produce lactate.

Indexed as

DNA Transposable ElementsEvolution, MolecularMutationTranscriptional ActivationBase SequenceGene Expression Regulation, BacterialLactic AcidLactococcus lactisL-Lactate DehydrogenaseMolecular Sequence DataMutagenesis, Site-DirectedSequence Analysis, DNADNA Transposable ElementsLactic AcidL-Lactate Dehydrogenase

Identifiers

PMID12867459
PMCPMC165757
OpenAlexW2098085074

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.