Evidence map›Paper›PMID 12867437›Full record

ArticleJournal of bacteriology2003

NhaR and RcsB independently regulate the osmCp1 promoter of Escherichia coli at overlapping regulatory sites.

Rachel Sturny, Kaymeuang Cam, Claude Gutierrez, Annie Conter

Abstract read
In one paragraph

Article in Journal of bacteriology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Rachel SturnyLaboratoire de Microbiologie et de Génétique Moléculaire, UMR5100 CNRS-Université Toulouse III, 31062 Toulouse Cedex, France.
Kaymeuang Cam
Claude Gutierrez
Annie Conter

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcription of the Escherichia coli osmC gene is induced by several stress conditions. osmC is expressed from two overlapping promoters, osmCp1 and osmCp2. The proximal promoter, osmCp2, is transcribed at the entry into the stationary phase by the sigma(s) sigma factor. The distal promoter, osmCp1, is activated by NhaR and RcsB. NhaR is a positive regulator of the LysR family and is known to be an activator of the nhaA gene encoding an Na(+)/H(+) antiporter. RcsB is the response regulator of the RcsCDB His-Asp phosphorelay signal transduction system. Genetic data indicated that activation of osmCp1 by both NhaR and RcsB requires the same short sequences upstream of the -35 region of the promoter. Accordingly, DNase I footprint analysis indicated that both activators protect an overlapping region close to the -35 box of the promoter and suggested that the regulatory effect is direct. Despite the overlap of the binding sites, each activator acts independent of the other and is specific for a particular stress. NhaR can stimulate osmCp1 in response to an osmotic signal even in the absence of RcsB. RcsB is responsible for the induction of osmCp1 by alteration of the cell envelope, even in the absence of NhaR. osmCp1 as an example of multiple-stress-responsive promoter is discussed in light of a comparison of the NhaR and RcsB target regions in the Enterobacteriaceae.

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsBase SequenceBinding SitesDeoxyribonucleasesDNA-Binding ProteinsDNA FootprintingEnterobacteriaceaeEscherichia coliEscherichia coli ProteinsHeat-Shock ResponseMolecular Sequence DataPromoter Regions, GeneticSequence AlignmentTrans-ActivatorsTranscription FactorsBacterial ProteinsDeoxyribonucleasesDNA-Binding ProteinsEscherichia coli ProteinsnhaR protein, E coliosmC protein, E coliRcsB protein, BacteriaRcsB protein, E coliTrans-ActivatorsTranscription Factors

Identifiers

PMID12867437
PMCPMC165750

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.