Evidence map›Paper›PMID 12862490›Full record

ArticleJournal of the American Chemical Society2003

Dipolar waves map the structure and topology of helices in membrane proteins.

Michael F Mesleh, Sangwon Lee, Gianluigi Veglia, David S Thiriot, Francesca M Marassi, Stanley J Opella

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 97 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Structure of CrgA, a cell division structural and regulatory protein from Mycobacterium tuberculosis, in lipid bilayers.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  8. Assignment of oriented sample NMR resonances from a three transmembrane helix protein.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2014
    Article
  9. Article
  10. When detergent meets bilayer: birth and coming of age of lipid bicelles.Progress in nuclear magnetic resonance spectroscopy · 2013
    Review
  11. Structure determination of membrane proteins by nuclear magnetic resonance spectroscopy.Annual review of analytical chemistry (Palo Alto, Calif.) · 2013
    Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Michael F MeslehDepartment of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive La Jolla, California 92093, USA.
Sangwon Lee
Gianluigi Veglia
David S Thiriot
Francesca M Marassi
Stanley J Opella
University of California, San Diego · USUniversity of Minnesota · USSanford Burnham Prebys Medical Discovery Institute · US

Funding

RESOURCE FOR SOLID STATE NMR OF PROTEINSP41EB002031 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI OPELLA, STANLEY J · 2003 to 2018
$16.3M
Membrane Protein Structural Genomics: M. tuberculosisP01GM064676 · NIGMS · FLORIDA STATE UNIVERSITY · PI CROSS, TIMOTHY A · 2001 to 2005
$8.0M
STRUCTURE DETERMINATION OF VPU FROM HIV 1P01GM056538 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BLASIE, J K · 1997 to 2002
$1.6M
Structure of Mammary Tumor Mat8 and the FXYD proteinsR01CA082864 · NCI · BURNHAM INSTITUTE FOR MEDICAL RESEARCH · PI MARASSI, FRANCESCA M · 2001 to 2005
$1.5M
NMR STUDIES OF BIOLOGICAL SUPRAMOLECULAR STRUCTURESR37GM024266 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI OPELLA, STANLEY J · 1993 to 2003
$872k
SOLID-STATE NMR OF PEPTIDESR01GM029754 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI OPELLA, STANLEY J · 1985 to 2002
$670k
Discovery and NMR Structure of HIV1 Vpu-binding PeptidesF32GM063300 · NIGMS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI THIRIOT, DAVID S · 2001 to 2003
$115k
NCI NIH HHS R01 CA082864NCI NIH HHS R01CA82864NCRR NIH HHS P41RR09731NIBIB NIH HHS P41 EB002031NIGMS NIH HHS F32 GM063300NIGMS NIH HHS F32GM63300NIGMS NIH HHS P01 GM056538NIGMS NIH HHS P01 GM064676NIGMS NIH HHS P01GM64676NIGMS NIH HHS R01 GM029754NIGMS NIH HHS R01GM29754NIGMS NIH HHS R37 GM024266NIGMS NIH HHS R37GM24266
6 · The paper itself

Abstract

Dipolar waves describe the structure and topology of helices in membrane proteins. The fit of sinusoids with the 3.6 residues per turn period of ideal alpha-helices to experimental measurements of dipolar couplings as a function of residue number makes it possible to simultaneously identify the residues in the helices, detect kinks or curvature in the helices, and determine the absolute rotations and orientations of helices in completely aligned bilayer samples and relative rotations and orientations of helices in a common molecular frame in weakly aligned micelle samples. Since as much as 80% of the structured residues in a membrane protein are in helices, the analysis of dipolar waves provides a significant step toward structure determination of helical membrane proteins by NMR spectroscopy.

Indexed as

Capsid ProteinsMembrane ProteinsModels, MolecularNuclear Magnetic Resonance, BiomolecularProtein Structure, SecondaryReceptor, Muscarinic M2Receptors, MuscarinicCapsid ProteinsMembrane ProteinsReceptor, Muscarinic M2Receptors, Muscarinic

Identifiers

PMID12862490
PMCPMC3272074
OpenAlexW1992820696

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.