Evidence map›Paper›PMID 12861006›Full record

ArticleMolecular and cellular biology2003

Deletion of the SNARE vti1b in mice results in the loss of a single SNARE partner, syntaxin 8.

Vadim Atlashkin, Vera Kreykenbohm, Eeva-Liisa Eskelinen, Dirk Wenzel, Afshin Fayyazi, Gabriele Fischer von Mollard

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 119 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Vadim AtlashkinZentrum Biochemie und Molekulare Zellbiologie, Abteilung Biochemie II, Universität Göttingen, Heinrich-Düker Weg 12, 37073 Göttingen, Germany.
Vera Kreykenbohm
Eeva-Liisa Eskelinen
Dirk Wenzel
Afshin Fayyazi
Gabriele Fischer von Mollard
Biologie Labor · CHKiel University · DEMax Planck Institute for Biophysical Chemistry · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SNARE proteins participate in recognition and fusion of membranes. A SNARE complex consisting of vti1b, syntaxin 8, syntaxin 7, and endobrevin/VAMP-8 which is required for fusion of late endosomes in vitro has been identified recently. Here, we generated mice deficient in vti1b to study the function of this protein in vivo. vti1b-deficient mice had reduced amounts of syntaxin 8 due to degradation of the syntaxin 8 protein, while the amounts of syntaxin 7 and endobrevin did not change. These data indicate that vti1b is specifically required for the stability of a single SNARE partner. vti1b-deficient mice were viable and fertile. Most vti1b-deficient mice were indistinguishable from wild-type mice and did not display defects in transport to the lysosome. However, 20% of the vti1b-deficient mice were smaller. Lysosomal degradation of an endocytosed protein was slightly delayed in hepatocytes derived from these mice. Multivesicular bodies and autophagic vacuoles accumulated in hepatocytes of some smaller vti1b-deficient mice. This suggests that other SNAREs can compensate for the reduction in syntaxin 8 and for the loss of vti1b in most mice even though vti1b shows only 30% amino acid identity with its closest relative.

Indexed as

Vesicular Transport ProteinsAllelesAnimalsBlotting, NorthernBlotting, WesternCarrier ProteinsCells, CulturedDNA, ComplementaryEndosomesExonsGene LibraryGenetic VectorsGenotypeHepatocytesLiverLysosomesCarrier ProteinsDNA, ComplementaryMembrane ProteinsQa-SNARE ProteinsQb-SNARE ProteinsQc-SNARE ProteinsRNA, MessengerR-SNARE ProteinsSnap29 protein, mouseSNARE ProteinsVamp8 protein, mouseVesicular Transport ProteinsVTI1A protein, humanVTI1B protein, humanVti1b protein, mouse

Identifiers

PMID12861006
PMCPMC165714
OpenAlexW2147799082

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.