Evidence map›Paper›PMID 12856939›Full record

ArticlePlant molecular biology2003

Characterization of a PttRPS18 promoter active in the vascular cambium region of hybrid aspen.

Ann-Marie Johansson, Chongying Wang, Anneli Stenberg, Magnus Hertzberg, C H Anthony Little, Olof Olsson

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In one paragraph

Article in Plant molecular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Ann-Marie JohanssonDepartment of Cell and Molecular Biology, Göteborg University, Medicinaregatan 9C, Box 462, SE-40530 Göteborg, Sweden.
Chongying Wang
Anneli Stenberg
Magnus Hertzberg
C H Anthony Little
Olof Olsson
University of Gothenburg · SELanzhou University · CNNatural Resources Canada · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

By screening 273 hybrid aspen plants transformed with a luciferase-based promoter trap T-DNA vector, one plant was found in which the reporter gene (luxF2) was activated only in cells of the cambial region, i.e., vascular cambium, phloem and differentiating xylem. Southern blot analysis revealed that this plant denoted #24 had a single T-DNA insert. The chromosomal regions flanking the T-DNA were cloned by plasmid rescue. A 757 bp DNA fragment, originating from the rescued plasmid and covering the genomic region immediately upstream from the right-border sequence of the T-DNA, was used as a probe to isolate the corresponding chromosomal region from a wild-type hybrid aspen genomic library. A hybrid aspen small ribosomal protein gene, PttRPS18, was then isolated. By screening a wt cambial region-specific cDNA library, two cDNA clones encoding a putative 152 amino acid PttRPS18 protein were isolated. Comparison of the DNA sequence immediately flanking the T-DNA insert in #24 with the corresponding wild-type sequence showed that only a minor deletion occurred during the T-DNA integration. Northern analysis revealed that the PttRPS18 gene was expressed mainly in the cambial region. By RT-PCR and DNA sequencing analysis, the exact structures of the PttRPS18 and luxF2 transcripts were determined. Finally, the hybrid aspen PttRPS18 promoter was fused to the uidA reporter gene and transformed into hybrid aspen plants. Histochemical analysis of GUS activity showed that the PttRPS18 promoter was expressed in the cambial region in the same manner as the luciferase reporter gene in the initial screening.

Indexed as

Amino Acid SequenceBase SequenceCloning, MolecularDNA, BacterialDNA, ComplementaryDNA, PlantGene Expression Regulation, PlantGlucuronidaseHybridization, GeneticLuciferasesMolecular Sequence DataPlants, Genetically ModifiedPlant StemsPlant StructuresPopulusPromoter Regions, GeneticDNA, BacterialDNA, ComplementaryDNA, PlantGlucuronidaseLuciferasesRecombinant Fusion ProteinsRibosomal Proteinsribosomal protein S18RNA, PlantT-DNA

Identifiers

PMID12856939
OpenAlexW1542231116

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.