Evidence map›Paper›PMID 12853628›Full record

ArticleNucleic acids research2003

Biochemical properties of phosphonoacetate and thiophosphonoacetate oligodeoxyribonucleotides.

David Sheehan, Benjamin Lunstad, Christina M Yamada, Brian G Stell, Marvin H Caruthers, Douglas J Dellinger

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.5field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 54 citations in OpenAlex.

  1. Review
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  8. Splice-Modulating Antisense Oligonucleotides as Therapeutics for Inherited Metabolic Diseases.BioDrugs : clinical immunotherapeutics, biopharmaceuticals and gene therapy · 2024
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  12. MicroRNAs Regulating Autophagy in Neurodegeneration.Advances in experimental medicine and biology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

David SheehanDepartment of Chemistry and Biochemistry, University of Colorado, Boulder, CO 80309, USA.
Benjamin Lunstad
Christina M Yamada
Brian G Stell
Marvin H Caruthers
Douglas J Dellinger
University of Colorado Boulder · US

Funding

CHEMICAL &ENZYMATIC STUDIES WITH SYNTHETIC DNA/RNAR01GM025680 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI CARUTHERS, MARVIN H · 1985 to 2000
$362k
IMPROVING ERBB2 ANTISENSE EFFICACY FOR CANCER THERAPYR01CA083953 · NCI · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI VAUGHN, JAMES P · 1999 to 2001
$354k
NCI NIH HHS CA83953NIGMS NIH HHS GM25680
6 · The paper itself

Abstract

Phosphorus-modified phosphonoacetate and thiophosphonoacetate oligodeoxyribonucleotides were chemically synthesized and their biochemical properties evaluated. Under physiological pH, these DNA analogs possess negative charge and form stable, complementary A-like DNA:RNA heteroduplexes when analyzed via circular dichroism spectroscopy. Phosphonoacetate and thiophosphonoacetate oligomers were found to stimulate RNase H activity and to be completely resistant to degradation by snake venom phosphodiesterase, DNase I and HeLa cell nuclear extract. Further research has demonstrated that neutral, esterified forms of these analogs can be taken up by cells. Phosphonoacetate and thiophosphonoacetate oligomers therefore represent a new class of oligodeoxyribonucleotide analogs having phosphorus- carbon bonds with considerable potential for use in biological research.

Indexed as

Chromatography, High Pressure LiquidCircular DichroismDeoxyribonuclease IHumansHydrogen-Ion ConcentrationNucleic Acid DenaturationOligodeoxyribonucleotidesPhosphonoacetic AcidRibonuclease HSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationTemperatureThionucleotidesTransfectionTumor Cells, CulturedDeoxyribonuclease IOligodeoxyribonucleotidesPhosphonoacetic AcidRibonuclease Hribonuclease HIThionucleotides

Identifiers

PMID12853628
PMCPMC165954
OpenAlexW1994293249

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.