Evidence map›Paper›PMID 12853611›Full record

ArticleNucleic acids research2003

Transient recruitment of the hnRNP K protein to inducibly transcribed gene loci.

Jerzy Ostrowski, Yasunobu Kawata, Daniel S Schullery, Oleg N Denisenko, Karol Bomsztyk

Abstract read
In one paragraph

Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Circ-GALNT16 restrains colorectal cancer progression by enhancing the SUMOylation of hnRNPK.Journal of experimental & clinical cancer research : CR · 2021
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Specification of DNA binding activity of NF-kappaB proteins.Cold Spring Harbor perspectives in biology · 2009
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jerzy OstrowskiDepartment of Medicine, University of Washington, Seattle, WA 98195, USA.
Yasunobu Kawata
Daniel S Schullery
Oleg N Denisenko
Karol Bomsztyk

Funding

INTERACTION OF K PROTEIN WITH PROTEIN KINASESR01GM045134 · NIGMS · UNIVERSITY OF WASHINGTON · PI BOMSZTYK, KAROL · 1991 to 2007
$2.4M
LAMININ GENE EXPRESSION IN GLOMERULAR CELLSR37DK045978 · NIDDK · UNIVERSITY OF WASHINGTON · PI BOMSZTYK, KAROL · 2003 to 2011
$2.2M
LAMININ GENE EXPRESSION IN GLOMERULAR CELLSR01DK045978 · NIDDK · UNIVERSITY OF WASHINGTON · PI BOMSZTYK, KAROL · 1993 to 2002
$563k
Regulation of cell cycle genes by K proteinR03TW005685 · FIC · UNIVERSITY OF WASHINGTON · PI BOMSZTYK, KAROL · 2001 to 2003
$120k
FIC NIH HHS R03 TW005685FIC NIH HHS TW05685NIDDK NIH HHS DK45978NIDDK NIH HHS R01 DK045978NIDDK NIH HHS R37 DK045978NIGMS NIH HHS GM45134NIGMS NIH HHS R01 GM045134
6 · The paper itself

Abstract

The heterogeneous nuclear ribonucleoprotein K protein is an RNA- and DNA-binding protein implicated in the regulation of multiple processes that comprise gene expression. We used chromatin immunoprecipitation (ChIP) assays to explore K protein interactions with serum-inducible, constitutively expressed and untranscribed gene loci in vivo. In the rat HTC-IR hepatoma cell line, serum treatment induced transient increases in the mRNA levels of two immediate-early genes, egr-1 and c-myc. ChIP analysis showed that the induction of egr-1 and c-myc genes was associated with a transient recruitment of K protein to multiple sites within each of these loci, including the promoter and transcribed regions. In contrast, recruitment of K protein to the constitutively transcribed beta-actin locus and to randomly chosen non-transcribed loci was far weaker. In rat mesangial cells, c-myc was constitutively expressed while egr-1 remained serum responsive. In these cells, ChIP analysis showed serum-induced recruitment to the inducible egr-1 but not to the c-myc locus. Pre-treatment with the transcription inhibitor actinomycin D blocked the inducible but not the constitutive binding of K protein to these loci. Taken together, the results of this study suggest that the transient recruitment of K protein to serum-responsive loci depends on the inducible transcription of these immediate-early genes.

Indexed as

AnimalsCulture Media, Serum-FreeDNADNA-Binding ProteinsEarly Growth Response Protein 1Gene ExpressionHeterogeneous-Nuclear Ribonucleoprotein KImmediate-Early ProteinsPrecipitin TestsProtein BindingProto-Oncogene Proteins c-mycReverse Transcriptase Polymerase Chain ReactionRNA, MessengerTranscription FactorsTranscription, GeneticTumor Cells, CulturedCulture Media, Serum-FreeDNADNA-Binding ProteinsEarly Growth Response Protein 1Egr1 protein, ratHeterogeneous-Nuclear Ribonucleoprotein KImmediate-Early ProteinsProto-Oncogene Proteins c-mycRNA, MessengerTranscription Factors

Identifiers

PMID12853611
PMCPMC165967

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.