Evidence map›Paper›PMID 12853574›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2003

Erasure of CpG methylation in Arabidopsis alters patterns of histone H3 methylation in heterochromatin.

Muhammad Tariq, Hidetoshi Saze, Aline V Probst, Jacek Lichota, Yoshiki Habu, Jerzy Paszkowski

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 125 papers.

0numbers the graph read from it
0cells of the map it votes in
125citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

125 citing papers in PubMed.

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  15. The role of ATXR6 expression in modulating genome stability and transposable element repression inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Review
  17. Review
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  20. Polycomb RequiresFrontiers in cell and developmental biology · 2021
    Article

65 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Muhammad TariqFriedrich Miescher Institute for Biomedical Research, Maulbeerstrasse 66, CH-4058 Basel, Switzerland. tariq@fmi.ch
Hidetoshi Saze
Aline V Probst
Jacek Lichota
Yoshiki Habu
Jerzy Paszkowski

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In mammals and plants, formation of heterochromatin is associated with hypermethylation of DNA at CpG sites and histone H3 methylation at lysine 9. Previous studies have revealed that maintenance of DNA methylation in Neurospora and Arabidopsis requires histone H3 methylation. A feedback loop from DNA methylation to histone methylation, however, is less understood. Its recent examination in Arabidopsis with a partial loss of function in DNA methyltransferase 1 (responsible for maintenance of CpG methylation) yielded conflicting results. Here we report that complete removal of CpG methylation in an Arabidopsis mutant null for DNA maintenance methyltransferase results in a clear loss of histone H3 methylation at lysine 9 in heterochromatin and also at heterochromatic loci that remain transcriptionally silent. Surprisingly, these dramatic alterations are not reflected in heterochromatin relaxation.

Indexed as

CpG IslandsDNA MethylationArabidopsisArabidopsis ProteinsDNA (Cytosine-5-)-MethyltransferasesDNA, PlantHeterochromatinHistonesLysineArabidopsis ProteinsDNA (Cytosine-5-)-MethyltransferasesDNA, PlantHeterochromatinHistonesLysineMET1 protein, Arabidopsis

Identifiers

PMID12853574
PMCPMC166397

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.