ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2003
Microsatellite analysis of genetic diversity and population genetic structure of a wild rice (Oryza rufipogon Griff.) in China.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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24 citing papers in PubMed, 122 citations in OpenAlex.
- Genetic Diversity and Marker-Trait Associations in Commercial Cultivars and WeedyPlants (Basel, Switzerland) · 2026Article
- Population structure and genetic differentiation analyses reveal high level of diversity and allelic richness in crop wild relatives of AA genome species of rice (Oryza sativa L.) in India.Journal of applied genetics · 2023Article
- SSR Genotyping and Marker-Trait Association with Yield Components in a Kazakh Germplasm Collection of Chickpea (Biomolecules · 2023Article
- Genotyping-by-Sequencing Based Investigation of Population Structure and Genome Wide Association Studies for Seven Agronomically Important Traits in a Set of 346 Oryza rufipogon Accessions.Rice (New York, N.Y.) · 2022Article
- Genetic diversity of wild rice accessions (Frontiers in plant science · 2022Article
- Genomic Analysis Provides Insights Into the Plant Architecture Variations inFrontiers in plant science · 2022Article
- Association analysis and evaluation of genetic diversity in wheat genotypes using SSR markers.Biologia futura · 2021Article
- Genetic variability of panicle architecture in indigenous rice landraces of Koraput region of Eastern Ghats of India for crop improvement.Physiology and molecular biology of plants : an international journal of functional plant biology · 2020Article
- Conservation recommendations for Oryza rufipogon Griff. in China based on genetic diversity analysis.Scientific reports · 2020Article
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- Assessment of genetic diversity and genetic structure of wild rice populations in Myanmar.Breeding science · 2019Article
- Genetic Diversity and Classification of the Cytoplasm of Chinese Elite Foxtail Millet [Frontiers in genetics · 2019Article
- Population genetics and evolutionary history of the wild rice speciesEcology and evolution · 2018Article
- Genetic diversity and population structure of3 Biotech · 2017Article
- Evaluation of genetic variation among wild rice populations in Cambodia.Breeding science · 2015Article
- Evaluation of Genetic Diversity and Development of a Core Collection of Wild Rice (Oryza rufipogon Griff.) Populations in China.PloS one · 2015Article
- Molecular diversity and population structure of Chinese green foxtail [Setaria viridis (L.) Beauv.] revealed by microsatellite analysis.Journal of experimental botany · 2013Article
- Article
- Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping.PLoS genetics · 2011Article
- Fine mapping and candidate gene analysis of spd6, responsible for small panicle and dwarfness in wild rice (Oryza rufipogon Griff.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
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3 authors at 2 institutions in 1 country.
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No grant is acknowledged in the PubMed record.
Abstract
Genetic diversity and population genetic structure of natural Oryza rufipogon populations in China were studied based on ten microsatellite loci. For a total of 237 individuals of 12 populations collected from four regions, a moderate to high level of genetic diversity was observed at population levels with the number of alleles per locus ( A) ranging from 2 to 18 (average 10.6), and polymorphic loci ( P) from 40.0% to 100% (average 83.3%). The observed heterozygosity ( H(O)) varied from 0.163 to 0.550 with the mean of 0.332, and the expected heterozygosity ( H(E)) from 0.164 to 0.648 with the mean of 0.413. The level of genetic diversity for Guangxi was the highest. These results are in good agreement with previous allozyme and RAPD studies. However, it was unexpected that high genetic differentiation among populations was found ( R(ST) = 0.5199, theta = 0.491), suggesting that about one-half of the genetic variation existed between the populations. Differentiation (pairwise theta) was positively correlated with geographical distance ( r = 0.464), as expected under the isolation by distance model. The habitat destruction and degradation throughout the geographic range of O. rufipogon may be the main factor attributed to high genetic differentiation among populations of O. rufipogon in China.
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