Evidence map›Paper›PMID 12839793›Full record

ArticleApplied and environmental microbiology2003

Identification of a new ribosomal protection type of tetracycline resistance gene, tet(36), from swine manure pits.

Gabrielle Whittle, Terence R Whitehead, Nathan Hamburger, Nadja B Shoemaker, Michael A Cotta, Abigail A Salyers

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Gabrielle WhittleDepartment of Microbiology, University of Illinois, 601 S. Goodwin Avenue, Urbana, IL 61801, USA.
Terence R Whitehead
Nathan Hamburger
Nadja B Shoemaker
Michael A Cotta
Abigail A Salyers

Funding

NETWORK TO MONITOR RESISTANCE IN COMMENSAL BACTERIAR01AI022383 · NIAID · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI SALYERS, ABIGAIL A · 1985 to 2010
$3.0M
Conjugal Transfer of Bacteriodes Antibiotic ResistancesR56AI022383 · NIAID · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI GARDNER, JEFFREY F · 2011 to 2011
$359k
NIAID NIH HHS AI 22383NIAID NIH HHS R01 AI022383NIAID NIH HHS R56 AI022383
6 · The paper itself

Abstract

Previously, only one ribosome protection type of a tetracycline resistance gene, tetQ, had been identified in Bacteroides spp. During an investigation of anaerobic bacteria present in swine feces and manure storage pits, a tetracycline-resistant Bacteroides strain was isolated. Subsequent analysis showed that this new Bacteroides strain, Bacteroides sp. strain 139, did not contain tetQ but contained a previously unidentified tetracycline resistance gene. Sequence analysis showed that the tetracycline resistance gene from Bacteroides sp. strain 139 encoded a protein (designated Tet 36) that defines a new class of ribosome protection types of tetracycline resistance. Tet 36 has 60% amino acid identity over 640 aa to TetQ and between 31 and 49% amino acid identity to the nine other ribosome protection types of tetracycline resistance genes. The tet(36) region was not observed to transfer from Bacteroides sp. strain 139 to another Bacteroides sp. under laboratory conditions. Yet tet(36) was found in other genera of bacteria isolated from the same swine manure pits and from swine feces. Phylogenetic analysis of the tet(36)-containing isolates indicated that tet(36) was present not only in the Cytophaga-Flavobacter-Bacteroides group to which Bacteroides sp. strain 139 belongs but also in gram-positive genera and gram-negative proteobacteria, indicating that horizontal transfer of tet(36) is occurring between these divergent phylogenetic groups in the farm environment.

Indexed as

AnimalsBacterial ProteinsBacteroidesFecesHumansManureMicrobial Sensitivity TestsMolecular Sequence DataPhylogenyRibosomesSequence Analysis, DNASwineTetracycline ResistanceBacterial ProteinsManure

Identifiers

PMID12839793
PMCPMC165177

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.