ReviewJournal of structural and functional genomics2003
Maximum likelihood methods for detecting adaptive evolution after gene duplication.
Review in Journal of structural and functional genomics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
97 citing papers in PubMed, 170 citations in OpenAlex.
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- Molecular Evolution of clock Genes in Vertebrates.Journal of molecular evolution · 2021Article
- Evolution of the codling moth pheromone via an ancient gene duplication.BMC biology · 2021Article
- A novel terpene synthase controls differences in anti-aphrodisiac pheromone production between closely related Heliconius butterflies.PLoS biology · 2021Article
- Adaptive Molecular Evolution ofBioMed research international · 2020Article
- Genetic variation and selection in the major histocompatibility complex Class II gene in the Guizhou pony.PeerJ · 2020Article
- EasyCodeML: A visual tool for analysis of selection using CodeML.Ecology and evolution · 2019Article
- Duplicated Myosin V Genes in Teleosts Show Evolutionary Rate Variations among the Motor and Cargo-Binding Domains.Genome biology and evolution · 2019Article
- Evolutionary Analysis of Makorin Ring Finger Protein 3 Reveals Positive Selection in Mammals.Evolutionary bioinformatics online · 2019Article
- Angiosperm-Wide and Family-Level Analyses ofFrontiers in plant science · 2019Article
- Genetic Analysis of Floral Symmetry Transition in African Violet Suggests the Involvement of Trans-acting Factor forFrontiers in plant science · 2018Article
- Maximum-likelihood approaches reveal signatures of positive selection in BMP15 and GDF9 genes modulating ovarian function in mammalian female fertility.Ecology and evolution · 2017Article
- Evolutionary Analysis of Pectin Lyases of the Genus Colletotrichum.Journal of molecular evolution · 2017Article
- Mechanistic insights into molecular evolution of species-specific differential glycosaminoglycan binding surfaces in growth-related oncogene chemokines.Royal Society open science · 2017Article
37 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The rapid accumulation of genomic sequences in public databases will finally allow large scale studies of gene family evolution, including evaluation of the role of positive Darwinian selection following a duplication event. This will be possible because recent statistical methods of comparing synonymous and nonsynonymous substitution rates permit reliable detection of positive selection at individual amino acid sites and along evolutionary lineages. Here, we summarize maximum-likelihood based methods, and present a framework for their application to analysis of gene families. Using these methods, we investigated the role of positive Darwinian selection in the ECP-EDN gene family of primates and the Troponin C gene family of vertebrates. We also comment on the limitations of these methods and discuss directions for further improvements.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.