Evidence map›Paper›PMID 12830434›Full record

ArticleAmerican journal of human genetics2003

BRD2 (RING3) is a probable major susceptibility gene for common juvenile myoclonic epilepsy.

Deb K Pal, Oleg V Evgrafov, Paula Tabares, Fengli Zhang, Martina Durner, David A Greenberg

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed, 1 pooled it
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 1 synthesis or guideline pooled it, 192 citations in OpenAlex.

  1. Pooled it
  2. Review
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  4. Review
  5. Observational
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  11. Role of BET Proteins in Inflammation and CNS Diseases.Frontiers in molecular biosciences · 2021
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  15. Review
  16. Article
  17. Epigenetic mechanisms underlying nervous system diseases.Handbook of clinical neurology · 2018
    Review
  18. Article
  19. Genetic and epigenetic mechanisms of epilepsy: a review.Neuropsychiatric disease and treatment · 2017
    Review
  20. Review

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Deb K PalDepartment of Biostatistics, Mailman School of Public Health, and Columbia Genome Center, Columbia University and Clinical and Genetic Epidemiology Unit, New York State Psychiatric Institute, New York, 10032, USA. dkp28@columbia.edu
Oleg V Evgrafov
Paula Tabares
Fengli Zhang
Martina Durner
David A Greenberg
Columbia University · USNew York Genome Center · US

Funding

RESOLVING HETEROGENEITY IN EPILEPSY WITH GENETIC MARKERSR01NS027941 · NINDS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI GREENBERG, DAVID A. · 1990 to 2010
$9.0M
SEARCH FOR GENES INFLUENCING CHILDHOOD ABSENCE EPILESPYR01NS037466 · NINDS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI DURNER, MARTINA · 1999 to 2013
$4.8M
PSYCHIATRIC GENETICS AND FAMILY STUDIES--ROBUST METHODSR01MH048858 · NIMH · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI HODGE, SUSAN E. · 1992 to 2010
$1.5M
TWO-LOCUS MODELS--HETEROGENEITY AND DIABETESR01DK031775 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GREENBERG, DAVID A. · 1987 to 2006
$1.1M
NIDDK NIH HHS DK31775NIDDK NIH HHS R01 DK031775NIMH NIH HHS MH48858NIMH NIH HHS R01 MH048858NINDS NIH HHS NS27941NINDS NIH HHS NS37466NINDS NIH HHS R01 NS027941NINDS NIH HHS R01 NS037466
6 · The paper itself

Abstract

Juvenile myoclonic epilepsy (JME) is a common form of generalized epilepsy that starts in adolescence. A major JME susceptibility locus (EJM1) was mapped to chromosomal region 6p21 in three independent linkage studies, and association was reported between JME and a microsatellite marker in the 6p21 region. The critical region for EJM1 is delimited by obligate recombinants at HLA-DQ and HLA-DP. In the present study, we found highly significant linkage disequilibrium (LD) between JME and a core haplotype of five single-nucleotide-polymorphism (SNP) and microsatellite markers in this critical region, with LD peaking in the BRD2 (RING3) gene (odds ratio 6.45; 95% confidence interval 2.36-17.58). DNA sequencing revealed two JME-associated SNP variants in the BRD2 (RING3) promoter region but no other potentially causative coding mutations in 20 probands from families with positive LOD scores. BRD2 (RING3) is a putative nuclear transcriptional regulator from a family of genes that are expressed during development. Our findings strongly suggest that BRD2 (RING3) is EJM1, the first gene identified for a common idiopathic epilepsy. These findings also suggest that abnormalities of neural development may be a cause of common idiopathic epilepsy, and the findings have implications for the generalizability of proposed pathogenetic mechanisms, derived from diseases that show Mendelian transmission, to their complex counterparts.

Indexed as

AdolescentBromodomain Containing ProteinsCase-Control StudiesChromosome MappingChromosomes, Human, Pair 6DNA Mutational AnalysisFemaleGenetic VariationHumansLinkage DisequilibriumMaleMolecular Sequence DataMyoclonic Epilepsy, JuvenilePolymorphism, Single NucleotidePromoter Regions, GeneticProtein Serine-Threonine KinasesBRD2 protein, humanBromodomain Containing ProteinsProtein Serine-Threonine KinasesTranscription Factors

Identifiers

PMID12830434
PMCPMC1180366
OpenAlexW2171503467

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.