Evidence map›Paper›PMID 12827381›Full record

ArticleChromosoma2003

W-derived BAC probes as a new tool for identification of the W chromosome and its aberrations in Bombyx mori.

Ken Sahara, Atsuo Yoshido, Naoko Kawamura, Akio Ohnuma, Hiroaki Abe, Kazuei Mita, Toshikazu Oshiki, Toru Shimada, Shin-Ichiro Asano, Hisanori Bando and 1 more

Abstract read
PubMed Publisher
In one paragraph

Article in Chromosoma, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
7.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Identification and Characterization of the Masculinizing Function of theInternational journal of molecular sciences · 2021
    Article
  5. Article
  6. Article
  7. Aquatic beetles Cercyon unipunctatus as bioindicators of pollution in Lake Edku and Mariut, Egypt.Environmental science and pollution research international · 2019
    Article
  8. Unique sex determination system in the silkworm, Bombyx mori: current status and beyond.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2018
    Review
  9. FeminizingEvolution letters · 2017
    Article
  10. High-throughput sequencing of a single chromosome: a moth W chromosome.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2013
    Article
  11. Rapid turnover of the W chromosome in geographical populations of wild silkmoths, Samia cynthia ssp.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2013
    Article
  12. Article
  13. Article
  14. Sex chromosome evolution in moths and butterflies.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2012
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Ken SaharaDivision of Applied Bioscience, Graduate School of Agriculture, Hokkaido University N9, W9, Kita-ku, Sapporo 060-8589, Japan. sahara@abs.agr.hokudai.ac.jp
Atsuo Yoshido
Naoko Kawamura
Akio Ohnuma
Hiroaki Abe
Kazuei Mita
Toshikazu Oshiki
Toru Shimada
Shin-Ichiro Asano
Hisanori Bando
Yuji Yasukochi
Hokkaido University · JPInstitute of Agrobiological Sciences · JPTokyo University of Agriculture and Technology · JPRakuno Gakuen University · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We isolated four W chromosome-derived bacterial artificial chromosome (W-BAC) clones from Bombyx mori BAC libraries by the polymerase chain reaction and used them as probes for fluorescence in situ hybridization (FISH) on chromosome preparations from B. mori females. All four W-BAC probes surprisingly highlighted the whole wild-type W sex chromosome and also identified the entire original W-chromosomal region in W chromosome-autosome translocation mutants. This is the first successful identification of a single chromosome by means of BAC-FISH in species with holokinetic chromosomes. Genomic in situ hybridization (GISH) by using female-derived genomic probes highlighted the W chromosome in a similar chromosome-painting manner. Besides the W, hybridization signals of W-BAC probes also occurred in telomeric and/or subtelomeric regions of the autosomes. These signals coincided well with those of female genomic probes except one additional GISH signal that was observed in a large heterochromatin block of one autosome pair. Our results support the opinion that the B. mori W chromosome accumulated transposable elements and other repetitive sequences that also occur, but scattered, elsewhere in the respective genome.

Indexed as

DNA ProbesSex Chromosome AberrationsSex ChromosomesAnimalsBombyxChromosomes, Artificial, BacterialFemaleGene LibraryGenomeIn Situ Hybridization, FluorescenceKaryotypingMaleDNA Probes

Identifiers

PMID12827381
OpenAlexW1968935151

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.