Evidence map›Paper›PMID 12827253›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2003

Biodiversity assessment based on cpDNA and crossability analysis in selected species of Allium subgenus Rhizirideum.

L W D van Raamsdonk, W Ensink, A W van Heusden, M Vrielink-van Ginkel, C Kik

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Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Conservation and Global Distribution of Onion (Plants (Basel, Switzerland) · 2023
    Review
  5. Article
  6. Phylogenomics ofPlant diversity · 2021
    Article
  7. Phylogeny and Historical Biogeography ofFrontiers in plant science · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Phylogenetic analysis of the highland papayas ( Vasconcellea) and allied genera (Caricaceae) using PCR-RFLP.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2004
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

L W D van RaamsdonkPlant Research International, Business Unit Genetics and Breeding, P.O. Box 16, 6700 AA Wageningen, The Netherlands. Leo.vanraamsdonk@wur.nl
W Ensink
A W van Heusden
M Vrielink-van Ginkel
C Kik

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The chloroplast DNA diversity of 33 accessions belonging to 16 species of five sections in Allium subgenus Rhizirideum was studied by analysing the sequence of three fragments: the trnL-F intergenic spacer, the rps 16 intron and rbcL (rubisco large subunit). The three sections Cepa, Schoenoprasum and Rhizirideum, representing the majority of the included species, each possess a separate clade after phylogenetic analysis. Exceptions to this general rule are the placement of Allium pskemense (section Cepa) connected to Allium senescens (section Rhizirideum) and Alium roylei, taking an intermediate position between sections Cepa and Schoenoprasum. Both species were located in their own section after nuclear DNA analysis. A range of crossing experiments has been carried out. The different position of A. roylei when comparing cpDNA and nDNA diversity was not confirmed with the production of hybrid seeds after crossing A. roylei with species other than those of section Cepa. The different position of A. pskemense in the cpDNA and the nDNA tree can not be compared to its crossability, since only a few crossing experiments are reported for this species. The hypothesis that a shorter distance between two species in a cpDNA tree compared to their distance in a nDNA tree will indicate interfertility at a certain level, is neither confirmed nor rejected by the currently available results.

Indexed as

BiodiversityDNA, ChloroplastAlliumBase SequenceMolecular Sequence DataPhylogenySequence AlignmentSequence Analysis, DNADNA, Chloroplast

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.