Evidence map›Paper›PMID 12825693›Full record

ArticlePlant molecular biology2003

Root-specific expression of a western white pine PR10 gene is mediated by different promoter regions in transgenic tobacco.

Jun-Jun Liu, Abul K M Ekramoddoullah

Abstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Jun-Jun LiuPacific Forestry Centre, Canadian Forest Service, Natural Resources Canada, 506 West Burnside Road, Victoria, BC, V8Z 1M5, Canada.
Abul K M Ekramoddoullah
Natural Resources Canada · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report here the isolation and characterization of a novel PR10 gene, PmPR10-1.14, from western white pine (Pinus monticola Dougl. ex. D. Don). The PmPR10-1.14 gene encodes a polypeptide exhibiting high similarity with other members of the PR10 family and corresponds to one of six isoforms immunodetected in the roots of western white pine. Northern blot and western immunoblot analyses showed that expression of the PR10 gene family, including PmPR10-1.14, was detected in vegetative tissues constitutively, but not in developing reproductive organs. RT-PCR with gene-specific primers showed that the transcript of PmPR10-1.14 gene was found only in lateral roots and needles during growth. To study PR10 gene regulation at the cellular level, PmPR10-1.14 promoter was fused to the beta-glucuronidase (GUS) report gene, and analyzed for transient and stable gene expression. The transient expression assays in agroinfiltrated tobacco leaves indicated that the core promoter of PmPR10-1.14 gene resided in the sequence from -101 to +69 relative to the first nucleotide of PR10 cDNA. Furthermore, the promoter region from -311 to -101 acted as an enhancer, and the region from -506 to -311 as a silencer. Fluorometric GUS assays of transgenic tobacco plants demonstrated that the longest promoter of 1675 bp directed GUS expression constitutively at high levels in the roots of mature plants, but expression levels were too low to be detectable in other organs in histochemical assays. Histochemical localization analysis showed that PmPR10-1.14 promoter directed a tissue-specific expression exclusively during the initiation and development of the lateral roots. The distal 5' deletion of the promoter to -311 did not decrease the expression level significantly in the roots, suggesting that the cis-regulatory elements necessary for a high level of gene expression reside in the proximal fragment from -311 to +69. As one striking feature, PmPR10-1.14 promoter contains two copies of direct repeated sequences as long as 281 bp at its distal 5' region. Deletion of one copy (-1326 to -1045) or both copies (-1675 to -1045) of the repeated sequences increased gene expression significantly in leaves and stems, which was regulated developmentally. Further deletion to -820 erased the increased gene expression in leaves and stems. These experiments revealed that the root-specific expression of PmPR10-1.14 gene is mediated by different promoter regions with both negative and positive regulatory mechanisms in transgenic tobacco plants.

Indexed as

Amino Acid SequenceBase SequenceDNA, PlantExonsGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGlucuronidaseIntronsMolecular Sequence DataNicotianaPinusPlant LeavesPlant ProteinsPlant RootsPlants, Genetically ModifiedPlant StemsDNA, PlantGlucuronidasepathogenesis-related proteins, plantPlant ProteinsRecombinant Fusion Proteins

Identifiers

PMID12825693
OpenAlexW2160497863

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.