ArticleNucleic acids research2003
Building protein diagrams on the web with the residue-based diagram editor RbDe.
Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
17 citing papers in PubMed.
- Charting the Proteins of Oropouche Virus.Viruses · 2025Review
- The structure of the proteins of Camp Hill virus.PloS one · 2025Article
- Mapping the Nonstructural Transmembrane Proteins of Severe Acute Respiratory Syndrome Coronavirus 2.Journal of computational biology : a journal of computational molecular cell biology · 2021Article
- Tachykinin-1 receptor antagonism suppresses substance-P- and compound 48/80-induced mast cell activation from rat mast cells expressing functional mas-related GPCR B3.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2020Article
- The Structure of the Membrane Protein of SARS-CoV-2 Resembles the Sugar Transporter SemiSWEET.Pathogens & immunity · 2020Article
- Article
- The sodium/multivitamin transporter: a multipotent system with therapeutic implications.Vitamins and hormones · 2015Review
- Molecular evolutionary characterization of a V1R subfamily unique to strepsirrhine primates.Genome biology and evolution · 2014Article
- Structure-function studies on non-synonymous SNPs of chemokine receptor gene implicated in cardiovascular disease: a computational approach.The protein journal · 2013Article
- Cholecystokinin receptors in Atlantic salmon: molecular cloning, gene expression, and structural basis.Physiological reports · 2013Article
- Specific domains in anterior pharynx-defective 1 determine its intramembrane interactions with nicastrin and presenilin.Neurobiology of aging · 2012Article
- Residues within the transmembrane domain of the glucagon-like peptide-1 receptor involved in ligand binding and receptor activation: modelling the ligand-bound receptor.Molecular endocrinology (Baltimore, Md.) · 2011Article
- Local and global dynamics of the G protein-coupled receptor CXCR1.Biochemistry · 2011Article
- Oligomeric size of the m2 muscarinic receptor in live cells as determined by quantitative fluorescence resonance energy transfer.The Journal of biological chemistry · 2010Article
- Evidence of positive selection at codon sites localized in extracellular domains of mammalian CC motif chemokine receptor proteins.BMC evolutionary biology · 2010Article
- High-resolution NMR spectroscopy of a GPCR in aligned bicelles.Journal of the American Chemical Society · 2006Article
- Atypical membrane topology and heteromeric function of Drosophila odorant receptors in vivo.PLoS biology · 2006Article
Corrections and comments
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Authors and funding
3 authors.
Funding
Abstract
The residue-based diagram editor (RbDe) is web-based software that greatly simplifies the construction of schematic diagrams of proteins. Residue-based diagrams display the sequence of a given protein in the context of its secondary and tertiary structure. Such diagrams are frequently used to summarize mutations or sequence features, in the context of the overall topology of a protein. The initial version of RbDe was designed for transmembrane proteins and has enabled many users to create diagrams of large systems such as G protein-coupled receptors or transporters. We present an extended diagram editor that supports other families of proteins. Users can now import custom-diagram layouts, use them to render members of any protein family and generate high-quality output for publication purposes. RbDe is available free over the web, at http://icb.mssm.edu/crt/RbDe
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Registered trials
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