ArticleNucleic acids research2003
AMIGene: Annotation of MIcrobial Genes.
Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers, 1 of them a synthesis that pooled it.
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Who cites it
91 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Genomic evolution and adaptation of arthropod-associated Rickettsia.Scientific reports · 2022Pooled it
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- Genome-Scale Modeling and Systems Metabolic Engineering of Vibrio natriegens for the Production of 1,3-Propanediol.Methods in molecular biology (Clifton, N.J.) · 2023Article
- Genetic Mining of Newly Isolated Salmophages for Phage Therapy.International journal of molecular sciences · 2022Article
- Identification of isolated or mixed strains from long reads: a challenge met onMicrobial genomics · 2021Article
- The Phosin PptA Plays a Negative Role in the Regulation of Antibiotic Production inAntibiotics (Basel, Switzerland) · 2021Article
- CRISPR sequences are sometimes erroneously translated and can contaminate public databases with spurious proteins containing spaced repeats.Database : the journal of biological databases and curation · 2020Article
- MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data.Briefings in bioinformatics · 2019Article
- On the Impact of the Pangenome and Annotation Discrepancies While Building Protein Sequence Databases for Bacteria Proteogenomics.Frontiers in microbiology · 2019Article
- Parallels between experimental and natural evolution of legume symbionts.Nature communications · 2018Article
- Article
- Comparative Genomics of Environmental and ClinicalFrontiers in microbiology · 2018Article
- Complete Genome Sequence of Hyperthermophilic ArchaeonGenome announcements · 2017Article
- Multi-omics Analysis Sheds Light on the Evolution and the Intracellular Lifestyle Strategies of Spotted Fever GroupFrontiers in microbiology · 2017Article
- Genome Sequences of Multiresistant Staphylococcus capitis Pulsotype NRCS-A and Methicillin-Susceptible S. capitis Pulsotype NRCS-C.Genome announcements · 2016Article
- Genome Sequence of the Tick-Borne Pathogen Rickettsia raoultii.Genome announcements · 2016Article
- Origin and Evolution of Rickettsial Plasmids.PloS one · 2016Article
- Complete genome sequence ofStandards in genomic sciences · 2016Article
- A comparative genomics and reductive dehalogenase gene transcription study of two chloroethene-respiring bacteria, Dehalococcoides mccartyi strains MB and 11a.Scientific reports · 2015Article
- Comparative Genomics of Environmental and Clinical Stenotrophomonas maltophilia Strains with Different Antibiotic Resistance Profiles.Genome biology and evolution · 2015Article
31 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
unlabelledAMIGene (Annotation of MIcrobial Genes) is an application for automatically identifying the most likely coding sequences (CDSs) in a large contig or a complete bacterial genome sequence. The first step in AMIGene is dedicated to the construction of Markov models that fit the input genomic data (i.e. the gene model), followed by the combination of well-known gene-finding methods and an heuristic approach for the selection of the most likely CDSs. The web interface allows the user to select one or several gene models applied to the analysis of the input sequence by the AMIGene program and to visualize the list of predicted CDSs graphically and in a downloadable text format. The AMIGene web site is accessible at the following address: http://www.genoscope.cns.fr/agc/tools/amigene/index.html ( CONTACT: sbocs@genoscope.cns.fr).
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.