ArticleNucleic acids research2003
GeneSeqer@PlantGDB: Gene structure prediction in plant genomes.
Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed.
- FINDER: an automated software package to annotate eukaryotic genes from RNA-Seq data and associated protein sequences.BMC bioinformatics · 2021Article
- Two hAT transposon genes were transferred from Brassicaceae to broomrapes and are actively expressed in some recipients.Scientific reports · 2016Article
- Identification of RNA silencing components in soybean and sorghum.BMC bioinformatics · 2014Article
- Development of SNP markers for genes of the phenylpropanoid pathway and their association to kernel and malting traits in barley.BMC genetics · 2013Article
- Evaluation of genome sequencing quality in selected plant species using expressed sequence tags.PloS one · 2013Article
- Evidence of cryptic introgression in tomato (Solanum lycopersicum L.) based on wild tomato species alleles.BMC plant biology · 2012Article
- Delineating the structural, functional and evolutionary relationships of sucrose phosphate synthase gene family II in wheat and related grasses.BMC plant biology · 2010Article
- Article
- An examination of targeted gene neighborhoods in strawberry.BMC plant biology · 2010Article
- Computational finishing of large sequence contigs reveals interspersed nested repeats and gene islands in the rf1-associated region of maize.Plant physiology · 2009Article
- WebGMAP: a web service for mapping and aligning cDNA sequences to genomes.Nucleic acids research · 2009Article
- Linkage mapping of putative regulator genes of barley grain development characterized by expression profiling.BMC plant biology · 2009Article
- The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice.Molecular plant · 2008Article
- High precision multi-genome scale reannotation of enzyme function by EFICAz.BMC genomics · 2006Article
- Article
- xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features.Genome biology · 2006Article
- yrGATE: a web-based gene-structure annotation tool for the identification and dissemination of eukaryotic genes.Genome biology · 2006Article
- Intron-flanking EST-PCR markers: from genetic marker development to gene structure analysis in Rhododendron.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2005Article
- Comparative plant genomics resources at PlantGDB.Plant physiology · 2005Article
- Gene identification in novel eukaryotic genomes by self-training algorithm.Nucleic acids research · 2005Article
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The GeneSeqer@PlantGDB Web server (http://www.plantgdb.org/cgi-bin/GeneSeqer.cgi) provides a gene structure prediction tool tailored for applications to plant genomic sequences. Predictions are based on spliced alignment with source-native ESTs and full-length cDNAs or non-native probes derived from putative homologous genes. The tool is illustrated with applications to refinement of current gene structure annotation and de novo annotation of draft genomic sequences. The service should facilitate expert annotation as a community effort by providing convenient access to all public plant sequences via the PlantGDB database, a simple four-step protocol for spliced alignment and visually appealing displays of the predicted gene structures in addition to detailed sequence alignments.
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