ArticleNucleic acids research2003
PromoSer: A large-scale mammalian promoter and transcription start site identification service.
Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
37 citing papers in PubMed, 85 citations in OpenAlex.
- Promoter Region and Regulatory Elements of IGF and VIP Genes Associated With Reproductive Traits in Chicken.International journal of genomics · 2025Article
- Analysis of promoter region and regulatory elements of Rhizobium giardinii DNA-binding response regulator A3AY_RS01 genes.Journal, genetic engineering & biotechnology · 2024Article
- The membrane associated NAC transcription factors ANAC060 and ANAC040 are functionally redundant in the inhibition of seed dormancy in Arabidopsis thaliana.Journal of experimental botany · 2022Article
- MAGE genes encoding for embryonic development in cattle is mainly regulated by zinc finger transcription factor family and slightly by CpG Islands.BMC genomic data · 2022Article
- Critical assessment of computational tools for prokaryotic and eukaryotic promoter prediction.Briefings in bioinformatics · 2022Article
- In silico analysis of promoter region and regulatory elements of glucan endo-1,3-beta-glucosidase encoding genes in Solanum tuberosum: cultivar DM 1-3 516 R44.Journal, genetic engineering & biotechnology · 2021Article
- In silico analysis of promoter regions and regulatory elements (motifs and CpG islands) of the genes encoding for alcohol production in Saccharomyces cerevisiaea S288C and Schizosaccharomyces pombe 972h.Journal, genetic engineering & biotechnology · 2021Article
- Aryl Hydrocarbon Receptor-Signaling Regulates EarlyFrontiers in immunology · 2019Article
- Characterization of gene promoters in pig: conservative elements, regulatory motifs and evolutionary trend.PeerJ · 2019Article
- Abundance, arrangement, and function of sequence motifs in the chicken promoters.BMC genomics · 2014Article
- The roles of HOXD10 in the development and progression of head and neck squamous cell carcinoma (HNSCC).British journal of cancer · 2014Article
- Bcrp1 transcription in mouse testis is controlled by a promoter upstream of a novel first exon (E1U) regulated by steroidogenic factor-1.Biochimica et biophysica acta · 2013Article
- CaMKIIδ-dependent inhibition of cAMP-response element-binding protein activity in vascular smooth muscle.The Journal of biological chemistry · 2013Article
- Rapid identification of novel functional promoters for gene therapy.Journal of molecular medicine (Berlin, Germany) · 2012Article
- Sequence Maneuverer: tool for sequence extraction from genomes.Bioinformation · 2012Article
- GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group.BMC genomics · 2012Article
- Green fluorescent protein reporter system with transcriptional sequence heterogeneity for monitoring the interferon response.Journal of virology · 2011Article
- Death-associated protein 3 is overexpressed in human thyroid oncocytic tumours.British journal of cancer · 2009Article
- The presence of distal and proximal promoters for rat mitochondrial glycerol-3-phosphate acyltransferase.Archives of biochemistry and biophysics · 2008Article
- Motif-directed network component analysis for regulatory network inference.BMC bioinformatics · 2008Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors at 1 institution in 1 country.
Funding
Abstract
Proximal promoters have a major impact on transcriptional regulation. Studies of the sequence-based nature of this regulation usually require collection of proximal promoter sequences for large sets of co-regulated genes. We report a newly implemented web service that facilitates extraction of user specified regions around the transcription start site of all annotated human, mouse or rat genes. The transcription start sites have been identified computationally by considering alignments of a large number of partial and full-length mRNA sequences to genomic DNA, with provision for alternative promoters. The service is publicly available at http://biowulf.bu.edu/zlab/PromoSer/.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.