ArticleNucleic acids research2003
FIE2: A program for the extraction of genomic DNA sequences around the start and translation initiation site of human genes.
Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
3 citing papers in PubMed.
- Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes.BMC bioinformatics · 2006Article
- ARGO: a web system for the detection of degenerate motifs and large-scale recognition of eukaryotic promoters.Nucleic acids research · 2005Article
- Computational method for discovery of estrogen responsive genes.Nucleic acids research · 2004Article
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Authors and funding
3 authors.
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Abstract
FIE2 (5' end Information Extraction v2) is a web-based program for easy identification and extraction of nucleotide sequence around the start of genes (promoter region) and their translation initiation site (TIS). Using information provided by the National Center for Biotechnology Information's (NCBI's) LocusLink, FIE2 identifies the 5'-most end of a gene on its respective chromosome based on alignment of a selected set of mRNAs representative of the gene. FIE2 then uses currently available human genome sequence information to extract the desired sequences. The accuracy of the information extracted is therefore limited by the accuracy and completeness of the sequence annotation and sequence alignment provided by LocusLink. In addition, multiple TIS positions are also occasionally presented, for example, as a result of multiple alignments of transcript variants. One of the key criteria of FIE2 is that it should extract only the correct information or attempt no extraction at all. To date, the authors are not aware of any publicly available web-based tool that uses the human genomic sequence to extract pertinent promoter- and TIS-region information in this fashion. FIE2 is freely available at http://sdmc.lit.org.sg/FIE2.0.
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Registered trials
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