ArticleNucleic acids research2003
GPRM: A genetic programming approach to finding common RNA secondary structure elements.
Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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Who cites it
8 citing papers in PubMed, 30 citations in OpenAlex.
- A New Method of RNA Secondary Structure Prediction Based on Convolutional Neural Network and Dynamic Programming.Frontiers in genetics · 2019Article
- RNA motif discovery: a computational overview.Biology direct · 2015Review
- Regulatory element identification in subsets of transcripts: comparison and integration of current computational methods.RNA (New York, N.Y.) · 2009Article
- Informatic resources for identifying and annotating structural RNA motifs.Molecular biotechnology · 2009Review
- Searching for IRES.RNA (New York, N.Y.) · 2006Review
- Evolutionary patterns of non-coding RNAs.Theory in biosciences = Theorie in den Biowissenschaften · 2005Article
- mRNA sequence features that contribute to translational regulation in Arabidopsis.Nucleic acids research · 2005Article
- ILM: a web server for predicting RNA secondary structures with pseudoknots.Nucleic acids research · 2004Article
Corrections and comments
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Authors and funding
1 author at 1 institution in 1 country.
Funding
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Abstract
RNA molecules play an important role in many biological activities. Knowing its secondary structure can help us better understand the molecule's ability to function. The methods for RNA structure determination have traditionally been implemented through biochemical, biophysical and phylogenetic analyses. As the advance of computer technology, an increasing number of computational approaches have recently been developed. They have different goals and apply various algorithms. For example, some focus on secondary structure prediction for a single sequence; some aim at finding a global alignment of multiple sequences. Some predict the structure based on free energy minimization; some make comparative sequence analyses to determine the structure. In this paper, we describe how to correctly use GPRM, a genetic programming approach to finding common secondary structure elements in a set of unaligned coregulated or homologous RNA sequences. GPRM can be accessed at http://bioinfo.cis.nctu.edu.tw/service/gprm/.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.