ArticleNucleic acids research2003
LOC3D: annotate sub-cellular localization for protein structures.
Article in Nucleic acids research, 2003. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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Who cites it
17 citing papers in PubMed.
- Recent Advancements in Subcellular Proteomics: Growing Impact of Organellar Protein Niches on the Understanding of Cell Biology.Journal of proteome research · 2024Review
- Multiple functions of the herpesvirus UL14 gene product in viral infection.Frontiers in microbiology · 2024Review
- Improving Protein Subcellular Location Classification by Incorporating Three-Dimensional Structure Information.Biomolecules · 2021Article
- Bird Eye View of Protein Subcellular Localization Prediction.Life (Basel, Switzerland) · 2020Review
- Co-localization of and interaction between duck enteritis virus glycoprotein H and L.BMC veterinary research · 2018Article
- Human Protein Subcellular Localization with Integrated Source and Multi-label Ensemble Classifier.Scientific reports · 2016Article
- CELLO2GO: a web server for protein subCELlular LOcalization prediction with functional gene ontology annotation.PloS one · 2014Article
- Molecular characterization of duck enteritis virus CHv strain UL49.5 protein and its colocalization with glycoprotein M.Journal of veterinary science · 2014Article
- Characterization of the duck enteritis virus UL55 protein.Virology journal · 2011Article
- Trafficking of some old world primate TRIM5α proteins through the nucleus.Retrovirology · 2011Article
- Characterization of subcellular localization of duck enteritis virus UL51 protein.Virology journal · 2009Article
- Semi-supervised protein subcellular localization.BMC bioinformatics · 2009Article
- Protein subcellular localization prediction based on compartment-specific features and structure conservation.BMC bioinformatics · 2007Article
- MATER protein expression and intracellular localization throughout folliculogenesis and preimplantation embryo development in the bovine.BMC developmental biology · 2006Article
- The PredictProtein server.Nucleic acids research · 2004Article
- LOCnet and LOCtarget: sub-cellular localization for structural genomics targets.Nucleic acids research · 2004Article
- Esub8: a novel tool to predict protein subcellular localizations in eukaryotic organisms.BMC bioinformatics · 2004Article
Corrections and comments
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Authors and funding
2 authors.
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Abstract
LOC3D (http://cubic.bioc.columbia.edu/db/LOC3d/) is both a weekly-updated database and a web server for predictions of sub-cellular localization for eukaryotic proteins of known three-dimensional (3D) structure. Localization is predicted using four different methods: (i) PredictNLS, prediction of nuclear proteins through nuclear localization signals; (ii) LOChom, inferring localization through sequence homology; (iii) LOCkey, inferring localization through automatic text analysis of SWISS-PROT keywords; and (iv) LOC3Dini, ab initio prediction through a system of neural networks and vector support machines. The final prediction is based on the method that predicts localization with the highest confidence. The LOC3D database currently contains predictions for >8700 eukaryotic protein chains taken from the Protein Data Bank (PDB). The web server can be used to predict sub-cellular localization for proteins for which only a predicted structure is available from threading servers. This makes the resource of particular interest to structural genomics initiatives.
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